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Cluster: HRGMv2_0320_CGC53

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0320_38 HRGMv2_0320_38_10 11192 12409 - 3.A.1.122.1
TC HRGMv2_0320_38 HRGMv2_0320_38_11 12467 13216 - 3.A.1.122.2
pfam HRGMv2_0320_38 HRGMv2_0320_38_12 13235 14467 - HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
pfam HRGMv2_0320_38 HRGMv2_0320_38_13 14531 15934 - OEP | OEP
CAZyme HRGMv2_0320_38 HRGMv2_0320_38_14 16374 17060 - GT51
TC HRGMv2_0320_38 HRGMv2_0320_38_15 17057 17731 - 9.B.186.1.3
CAZyme HRGMv2_0320_38 HRGMv2_0320_38_16 17900 19054 - CE9
Gene ID: HRGMv2_0320_38_10
Type: TC
Location: 11192 - 12409 (-)
Gene ID: HRGMv2_0320_38_11
Type: TC
Location: 12467 - 13216 (-)
Gene ID: HRGMv2_0320_38_12
Type: pfam
Location: 13235 - 14467 (-)
Gene ID: HRGMv2_0320_38_13
Type: pfam
Location: 14531 - 15934 (-)
Gene ID: HRGMv2_0320_38_14
Type: CAZyme
Location: 16374 - 17060 (-)
Gene ID: HRGMv2_0320_38_15
Type: TC
Location: 17057 - 17731 (-)
Gene ID: HRGMv2_0320_38_16
Type: CAZyme
Location: 17900 - 19054 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0320_38_14 vegan > omnivore 1.20360 0.00701

🧭 Explore Read Mapping of CGC

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