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Cluster: HRGMv2_0320_CGC50

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0320_35 HRGMv2_0320_35_14 13780 16392 - GH13_10
CAZyme HRGMv2_0320_35 HRGMv2_0320_35_15 16847 19435 - CE1 | GH13_46
pfam HRGMv2_0320_35 HRGMv2_0320_35_16 19666 21069 - SusF_N
pfam HRGMv2_0320_35 HRGMv2_0320_35_17 21106 22278 - SusE | SusF_SusE
TC HRGMv2_0320_35 HRGMv2_0320_35_18 22320 23996 - 8.A.46.1.1
TC HRGMv2_0320_35 HRGMv2_0320_35_19 24018 27047 - 1.B.14.6.1
CAZyme HRGMv2_0320_35 HRGMv2_0320_35_20 27827 30301 - GH2
CAZyme HRGMv2_0320_35 HRGMv2_0320_35_21 30314 31483 - GH53
TF HRGMv2_0320_35 HRGMv2_0320_35_22 31852 32856 + LacI
TC HRGMv2_0320_35 HRGMv2_0320_35_23 32918 34282 + 2.A.2.6.2
CAZyme HRGMv2_0320_35 HRGMv2_0320_35_24 34432 36744 + GH65
TC HRGMv2_0320_35 HRGMv2_0320_35_25 36867 38102 - 3.B.1.1.5
Gene ID: HRGMv2_0320_35_14
Type: CAZyme
Location: 13780 - 16392 (-)
Gene ID: HRGMv2_0320_35_15
Type: CAZyme
Location: 16847 - 19435 (-)
Gene ID: HRGMv2_0320_35_16
Type: pfam
Location: 19666 - 21069 (-)
Gene ID: HRGMv2_0320_35_17
Type: pfam
Location: 21106 - 22278 (-)
Gene ID: HRGMv2_0320_35_18
Type: TC
Location: 22320 - 23996 (-)
Gene ID: HRGMv2_0320_35_19
Type: TC
Location: 24018 - 27047 (-)
Gene ID: HRGMv2_0320_35_20
Type: CAZyme
Location: 27827 - 30301 (-)
Gene ID: HRGMv2_0320_35_21
Type: CAZyme
Location: 30314 - 31483 (-)
Gene ID: HRGMv2_0320_35_22
Type: TF
Location: 31852 - 32856 (+)
Gene ID: HRGMv2_0320_35_23
Type: TC
Location: 32918 - 34282 (+)
Gene ID: HRGMv2_0320_35_24
Type: CAZyme
Location: 34432 - 36744 (+)
Gene ID: HRGMv2_0320_35_25
Type: TC
Location: 36867 - 38102 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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