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Cluster: HRGMv2_0320_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0320_21 HRGMv2_0320_21_53 59676 60560 + GT5
pfam HRGMv2_0320_21 HRGMv2_0320_21_54 60585 62162 + DUF4270
CAZyme HRGMv2_0320_21 HRGMv2_0320_21_55 62293 63663 - GH57
CAZyme HRGMv2_0320_21 HRGMv2_0320_21_56 63685 64938 - GT4
CAZyme HRGMv2_0320_21 HRGMv2_0320_21_57 64947 66905 - GH133
NULL(UNKNOWN) HRGMv2_0320_21 HRGMv2_0320_21_58 66983 67123 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0320_21 HRGMv2_0320_21_59 67171 67779 + 9.B.104.3.2
TF HRGMv2_0320_21 HRGMv2_0320_21_60 67960 68622 + 0037767
peptidase HRGMv2_0320_21 HRGMv2_0320_21_61 68763 70316 - C26.957
TC HRGMv2_0320_21 HRGMv2_0320_21_62 70480 70929 - 1.A.22.1.1
Gene ID: HRGMv2_0320_21_53
Type: CAZyme
Location: 59676 - 60560 (+)
Gene ID: HRGMv2_0320_21_54
Type: pfam
Location: 60585 - 62162 (+)
Gene ID: HRGMv2_0320_21_55
Type: CAZyme
Location: 62293 - 63663 (-)
Gene ID: HRGMv2_0320_21_56
Type: CAZyme
Location: 63685 - 64938 (-)
Gene ID: HRGMv2_0320_21_57
Type: CAZyme
Location: 64947 - 66905 (-)
Gene ID: HRGMv2_0320_21_58
Type:
Location: 66983 - 67123 (-)
Gene ID: HRGMv2_0320_21_59
Type: TC
Location: 67171 - 67779 (+)
Gene ID: HRGMv2_0320_21_60
Type: TF
Location: 67960 - 68622 (+)
Gene ID: HRGMv2_0320_21_61
Type: peptidase
Location: 68763 - 70316 (-)
Gene ID: HRGMv2_0320_21_62
Type: TC
Location: 70480 - 70929 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0320_21_62 vegan > omnivore 1.17674 0.00701

🧭 Explore Read Mapping of CGC

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