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Cluster: HRGMv2_0320_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0320_19 HRGMv2_0320_19_11 14466 17615 + 1.B.14.6.1
pfam HRGMv2_0320_19 HRGMv2_0320_19_12 17642 19555 + SusD_RagB | SusD-like_3
TC HRGMv2_0320_19 HRGMv2_0320_19_13 19596 22634 + 1.B.14.6.1
pfam HRGMv2_0320_19 HRGMv2_0320_19_14 22675 24339 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0320_19 HRGMv2_0320_19_15 24384 25277 + CBM32
CAZyme HRGMv2_0320_19 HRGMv2_0320_19_16 25298 26812 + GH16_3
CAZyme HRGMv2_0320_19 HRGMv2_0320_19_17 26989 27849 + GH16_3
CAZyme HRGMv2_0320_19 HRGMv2_0320_19_18 27892 29145 + GH154
CAZyme HRGMv2_0320_19 HRGMv2_0320_19_19 29184 30491 + PL42
CAZyme HRGMv2_0320_19 HRGMv2_0320_19_20 30544 31665 + GH105
NULL(UNKNOWN) HRGMv2_0320_19 HRGMv2_0320_19_21 31681 32118 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0320_19 HRGMv2_0320_19_22 32336 34267 + GH43_19 | GH43_34
CAZyme HRGMv2_0320_19 HRGMv2_0320_19_23 34307 36250 + GH97
CAZyme HRGMv2_0320_19 HRGMv2_0320_19_24 36313 38796 + GH51_2
CAZyme HRGMv2_0320_19 HRGMv2_0320_19_25 39011 40945 + GH51_2
CAZyme HRGMv2_0320_19 HRGMv2_0320_19_26 41059 44157 + GH2
CAZyme HRGMv2_0320_19 HRGMv2_0320_19_27 44308 46551 + CE1
CAZyme HRGMv2_0320_19 HRGMv2_0320_19_28 46648 47808 + GH43_24
NULL(UNKNOWN) HRGMv2_0320_19 HRGMv2_0320_19_29 47980 48237 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0320_19 HRGMv2_0320_19_30 48337 51135 + 1.B.14.12.2
pfam HRGMv2_0320_19 HRGMv2_0320_19_31 51351 52292 + Metallophos
NULL(UNKNOWN) HRGMv2_0320_19 HRGMv2_0320_19_32 52401 52526 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0320_19 HRGMv2_0320_19_33 52712 56023 - GH35 | GH43_24
Gene ID: HRGMv2_0320_19_11
Type: TC
Location: 14466 - 17615 (+)
Gene ID: HRGMv2_0320_19_12
Type: pfam
Location: 17642 - 19555 (+)
Gene ID: HRGMv2_0320_19_13
Type: TC
Location: 19596 - 22634 (+)
Gene ID: HRGMv2_0320_19_14
Type: pfam
Location: 22675 - 24339 (+)
Gene ID: HRGMv2_0320_19_15
Type: CAZyme
Location: 24384 - 25277 (+)
Gene ID: HRGMv2_0320_19_16
Type: CAZyme
Location: 25298 - 26812 (+)
Gene ID: HRGMv2_0320_19_17
Type: CAZyme
Location: 26989 - 27849 (+)
Gene ID: HRGMv2_0320_19_18
Type: CAZyme
Location: 27892 - 29145 (+)
Gene ID: HRGMv2_0320_19_19
Type: CAZyme
Location: 29184 - 30491 (+)
Gene ID: HRGMv2_0320_19_20
Type: CAZyme
Location: 30544 - 31665 (+)
Gene ID: HRGMv2_0320_19_21
Type:
Location: 31681 - 32118 (+)
Gene ID: HRGMv2_0320_19_22
Type: CAZyme
Location: 32336 - 34267 (+)
Gene ID: HRGMv2_0320_19_23
Type: CAZyme
Location: 34307 - 36250 (+)
Gene ID: HRGMv2_0320_19_24
Type: CAZyme
Location: 36313 - 38796 (+)
Gene ID: HRGMv2_0320_19_25
Type: CAZyme
Location: 39011 - 40945 (+)
Gene ID: HRGMv2_0320_19_26
Type: CAZyme
Location: 41059 - 44157 (+)
Gene ID: HRGMv2_0320_19_27
Type: CAZyme
Location: 44308 - 46551 (+)
Gene ID: HRGMv2_0320_19_28
Type: CAZyme
Location: 46648 - 47808 (+)
Gene ID: HRGMv2_0320_19_29
Type:
Location: 47980 - 48237 (-)
Gene ID: HRGMv2_0320_19_30
Type: TC
Location: 48337 - 51135 (+)
Gene ID: HRGMv2_0320_19_31
Type: pfam
Location: 51351 - 52292 (+)
Gene ID: HRGMv2_0320_19_32
Type:
Location: 52401 - 52526 (+)
Gene ID: HRGMv2_0320_19_33
Type: CAZyme
Location: 52712 - 56023 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0320_19_19 vegan > omnivore 1.07960 0.00701
HRGMv2_0320_19_33 vegan > omnivore 1.09144 0.00701

🧭 Explore Read Mapping of CGC

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