Cluster: HRGMv2_0320_CGC4
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 11
- Substrate:
- Genome ID: HRGMv2_0320
- CGC Family ID: CGCFAM_06481
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0320_1 | HRGMv2_0320_1_88 | 107171 | 110260 | + | PL8_2 |
| CAZyme | HRGMv2_0320_1 | HRGMv2_0320_1_89 | 110271 | 111815 | + | GH29 |
| pfam | HRGMv2_0320_1 | HRGMv2_0320_1_90 | 111975 | 112919 | - | Dus |
| CAZyme | HRGMv2_0320_1 | HRGMv2_0320_1_91 | 112935 | 114995 | - | PL8_3 |
| CAZyme | HRGMv2_0320_1 | HRGMv2_0320_1_92 | 115541 | 117784 | - | GH95 |
| CAZyme | HRGMv2_0320_1 | HRGMv2_0320_1_93 | 117901 | 120372 | - | GH95 |
| CAZyme | HRGMv2_0320_1 | HRGMv2_0320_1_94 | 120435 | 123086 | - | GH2 |
| CAZyme | HRGMv2_0320_1 | HRGMv2_0320_1_95 | 123123 | 125195 | - | GH20 |
| pfam | HRGMv2_0320_1 | HRGMv2_0320_1_96 | 125240 | 126133 | - | Sulfatase | Phosphodiest | Metalloenzyme |
| CAZyme | HRGMv2_0320_1 | HRGMv2_0320_1_97 | 126244 | 128457 | - | PL8_3 |
| CAZyme | HRGMv2_0320_1 | HRGMv2_0320_1_98 | 128700 | 130292 | - | GH16_3 |
| pfam | HRGMv2_0320_1 | HRGMv2_0320_1_99 | 130325 | 132001 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0320_1 | HRGMv2_0320_1_100 | 132021 | 135020 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0320_1 | HRGMv2_0320_1_101 | 135052 | 136872 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0320_1 | HRGMv2_0320_1_102 | 136885 | 140019 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0320_1 | HRGMv2_0320_1_103 | 140189 | 142510 | - | PL8_2 |
| sulfatase | HRGMv2_0320_1 | HRGMv2_0320_1_104 | 142534 | 143913 | - | S1_9 |
| CAZyme | HRGMv2_0320_1 | HRGMv2_0320_1_105 | 144088 | 146559 | - | PL30 |
Gene ID: HRGMv2_0320_1_88
Type: CAZyme
Location: 107171 - 110260 (+)
Type: CAZyme
Location: 107171 - 110260 (+)
Gene ID: HRGMv2_0320_1_89
Type: CAZyme
Location: 110271 - 111815 (+)
Type: CAZyme
Location: 110271 - 111815 (+)
Gene ID: HRGMv2_0320_1_90
Type: pfam
Location: 111975 - 112919 (-)
Type: pfam
Location: 111975 - 112919 (-)
Gene ID: HRGMv2_0320_1_91
Type: CAZyme
Location: 112935 - 114995 (-)
Type: CAZyme
Location: 112935 - 114995 (-)
Gene ID: HRGMv2_0320_1_92
Type: CAZyme
Location: 115541 - 117784 (-)
Type: CAZyme
Location: 115541 - 117784 (-)
Gene ID: HRGMv2_0320_1_93
Type: CAZyme
Location: 117901 - 120372 (-)
Type: CAZyme
Location: 117901 - 120372 (-)
Gene ID: HRGMv2_0320_1_94
Type: CAZyme
Location: 120435 - 123086 (-)
Type: CAZyme
Location: 120435 - 123086 (-)
Gene ID: HRGMv2_0320_1_95
Type: CAZyme
Location: 123123 - 125195 (-)
Type: CAZyme
Location: 123123 - 125195 (-)
Gene ID: HRGMv2_0320_1_96
Type: pfam
Location: 125240 - 126133 (-)
Type: pfam
Location: 125240 - 126133 (-)
Gene ID: HRGMv2_0320_1_97
Type: CAZyme
Location: 126244 - 128457 (-)
Type: CAZyme
Location: 126244 - 128457 (-)
Gene ID: HRGMv2_0320_1_98
Type: CAZyme
Location: 128700 - 130292 (-)
Type: CAZyme
Location: 128700 - 130292 (-)
Gene ID: HRGMv2_0320_1_99
Type: pfam
Location: 130325 - 132001 (-)
Type: pfam
Location: 130325 - 132001 (-)
Gene ID: HRGMv2_0320_1_100
Type: TC
Location: 132021 - 135020 (-)
Type: TC
Location: 132021 - 135020 (-)
Gene ID: HRGMv2_0320_1_101
Type: pfam
Location: 135052 - 136872 (-)
Type: pfam
Location: 135052 - 136872 (-)
Gene ID: HRGMv2_0320_1_102
Type: TC
Location: 136885 - 140019 (-)
Type: TC
Location: 136885 - 140019 (-)
Gene ID: HRGMv2_0320_1_103
Type: CAZyme
Location: 140189 - 142510 (-)
Type: CAZyme
Location: 140189 - 142510 (-)
Gene ID: HRGMv2_0320_1_104
Type: sulfatase
Location: 142534 - 143913 (-)
Type: sulfatase
Location: 142534 - 143913 (-)
Gene ID: HRGMv2_0320_1_105
Type: CAZyme
Location: 144088 - 146559 (-)
Type: CAZyme
Location: 144088 - 146559 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ndongoniae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.