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Cluster: HRGMv2_0320_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0320_16 HRGMv2_0320_16_20 26366 28654 + 2.A.6.2.37
TC HRGMv2_0320_16 HRGMv2_0320_16_21 28661 29404 + 2.A.6.2.37
pfam HRGMv2_0320_16 HRGMv2_0320_16_22 29614 31002 + OEP | OEP
NULL(UNKNOWN) HRGMv2_0320_16 HRGMv2_0320_16_23 31116 31658 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0320_16 HRGMv2_0320_16_24 31615 32172 + 9.B.33.1.2
STP HRGMv2_0320_16 HRGMv2_0320_16_25 32179 32556 + Response_reg
TF HRGMv2_0320_16 HRGMv2_0320_16_26 32595 32978 + LytTR
TC HRGMv2_0320_16 HRGMv2_0320_16_27 32975 35623 - 3.A.3.5.19
TC HRGMv2_0320_16 HRGMv2_0320_16_28 35902 37254 - 2.A.66.1.36
pfam HRGMv2_0320_16 HRGMv2_0320_16_29 37431 38114 + TPR_19
TF HRGMv2_0320_16 HRGMv2_0320_16_30 38134 42192 - HTH_AraC
CAZyme HRGMv2_0320_16 HRGMv2_0320_16_31 42403 44349 + GH97
TC HRGMv2_0320_16 HRGMv2_0320_16_32 44513 47671 + 1.B.14.6.1
pfam HRGMv2_0320_16 HRGMv2_0320_16_33 47706 49730 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0320_16 HRGMv2_0320_16_34 49757 51097 + CBM32
CAZyme HRGMv2_0320_16 HRGMv2_0320_16_35 51294 53711 + GH2
Gene ID: HRGMv2_0320_16_20
Type: TC
Location: 26366 - 28654 (+)
Gene ID: HRGMv2_0320_16_21
Type: TC
Location: 28661 - 29404 (+)
Gene ID: HRGMv2_0320_16_22
Type: pfam
Location: 29614 - 31002 (+)
Gene ID: HRGMv2_0320_16_23
Type:
Location: 31116 - 31658 (+)
Gene ID: HRGMv2_0320_16_24
Type: TC
Location: 31615 - 32172 (+)
Gene ID: HRGMv2_0320_16_25
Type: STP
Location: 32179 - 32556 (+)
Gene ID: HRGMv2_0320_16_26
Type: TF
Location: 32595 - 32978 (+)
Gene ID: HRGMv2_0320_16_27
Type: TC
Location: 32975 - 35623 (-)
Gene ID: HRGMv2_0320_16_28
Type: TC
Location: 35902 - 37254 (-)
Gene ID: HRGMv2_0320_16_29
Type: pfam
Location: 37431 - 38114 (+)
Gene ID: HRGMv2_0320_16_30
Type: TF
Location: 38134 - 42192 (-)
Gene ID: HRGMv2_0320_16_31
Type: CAZyme
Location: 42403 - 44349 (+)
Gene ID: HRGMv2_0320_16_32
Type: TC
Location: 44513 - 47671 (+)
Gene ID: HRGMv2_0320_16_33
Type: pfam
Location: 47706 - 49730 (+)
Gene ID: HRGMv2_0320_16_34
Type: CAZyme
Location: 49757 - 51097 (+)
Gene ID: HRGMv2_0320_16_35
Type: CAZyme
Location: 51294 - 53711 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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