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Cluster: HRGMv2_0320_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0320_11 HRGMv2_0320_11_32 41430 43832 + PL30
CAZyme HRGMv2_0320_11 HRGMv2_0320_11_33 44134 46416 + GH3
CAZyme HRGMv2_0320_11 HRGMv2_0320_11_34 46515 48308 + GH16_3 | GH43_29
CAZyme HRGMv2_0320_11 HRGMv2_0320_11_35 48431 50266 + GH2
CAZyme HRGMv2_0320_11 HRGMv2_0320_11_36 50278 52863 + GH3
NULL(UNKNOWN) HRGMv2_0320_11 HRGMv2_0320_11_37 52877 53260 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0320_11 HRGMv2_0320_11_38 53519 55030 + GHL10
TC HRGMv2_0320_11 HRGMv2_0320_11_39 55185 55733 - 2.A.51.1.6
TC HRGMv2_0320_11 HRGMv2_0320_11_40 55760 56308 - 2.A.51.1.6
Gene ID: HRGMv2_0320_11_32
Type: CAZyme
Location: 41430 - 43832 (+)
Gene ID: HRGMv2_0320_11_33
Type: CAZyme
Location: 44134 - 46416 (+)
Gene ID: HRGMv2_0320_11_34
Type: CAZyme
Location: 46515 - 48308 (+)
Gene ID: HRGMv2_0320_11_35
Type: CAZyme
Location: 48431 - 50266 (+)
Gene ID: HRGMv2_0320_11_36
Type: CAZyme
Location: 50278 - 52863 (+)
Gene ID: HRGMv2_0320_11_37
Type:
Location: 52877 - 53260 (-)
Gene ID: HRGMv2_0320_11_38
Type: pfam
Location: 53519 - 55030 (+)
Gene ID: HRGMv2_0320_11_39
Type: TC
Location: 55185 - 55733 (-)
Gene ID: HRGMv2_0320_11_40
Type: TC
Location: 55760 - 56308 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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