dbCAN Logo

Cluster: HRGMv2_0320_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0320_10 HRGMv2_0320_10_4 2090 3766 - 2.A.53.3.9
CAZyme HRGMv2_0320_10 HRGMv2_0320_10_5 4110 5888 + GH43_29
CAZyme HRGMv2_0320_10 HRGMv2_0320_10_6 5925 7784 + GH146
CAZyme HRGMv2_0320_10 HRGMv2_0320_10_7 8248 9564 + GH29
pfam HRGMv2_0320_10 HRGMv2_0320_10_8 9778 10332 + F5_F8_type_C | Fn3_assoc | CHB_HEX_C_1
TF HRGMv2_0320_10 HRGMv2_0320_10_9 11109 15059 + HTH_AraC
CAZyme HRGMv2_0320_10 HRGMv2_0320_10_10 15200 16720 + GH43_16
CAZyme HRGMv2_0320_10 HRGMv2_0320_10_11 16870 18240 + CBM6 | GH43_29
CAZyme HRGMv2_0320_10 HRGMv2_0320_10_12 18261 19820 + CBM91 | GH43_10
pfam HRGMv2_0320_10 HRGMv2_0320_10_13 20585 21892 + TIG
TC HRGMv2_0320_10 HRGMv2_0320_10_14 21943 25020 + 1.B.14.6.1
Gene ID: HRGMv2_0320_10_4
Type: TC
Location: 2090 - 3766 (-)
Gene ID: HRGMv2_0320_10_5
Type: CAZyme
Location: 4110 - 5888 (+)
Gene ID: HRGMv2_0320_10_6
Type: CAZyme
Location: 5925 - 7784 (+)
Gene ID: HRGMv2_0320_10_7
Type: CAZyme
Location: 8248 - 9564 (+)
Gene ID: HRGMv2_0320_10_8
Type: pfam
Location: 9778 - 10332 (+)
Gene ID: HRGMv2_0320_10_9
Type: TF
Location: 11109 - 15059 (+)
Gene ID: HRGMv2_0320_10_10
Type: CAZyme
Location: 15200 - 16720 (+)
Gene ID: HRGMv2_0320_10_11
Type: CAZyme
Location: 16870 - 18240 (+)
Gene ID: HRGMv2_0320_10_12
Type: CAZyme
Location: 18261 - 19820 (+)
Gene ID: HRGMv2_0320_10_13
Type: pfam
Location: 20585 - 21892 (+)
Gene ID: HRGMv2_0320_10_14
Type: TC
Location: 21943 - 25020 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List