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Cluster: HRGMv2_0320_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0320_3 HRGMv2_0320_3_11 14100 16016 - 9.B.18.2.1
TC HRGMv2_0320_3 HRGMv2_0320_3_12 16150 17124 - 9.B.146.1.7
pfam HRGMv2_0320_3 HRGMv2_0320_3_13 17159 17560 - FdtA | Cupin_2 | DUF6016 | DUF6016
pfam HRGMv2_0320_3 HRGMv2_0320_3_14 17574 18530 - 3Beta_HSD | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd
CAZyme HRGMv2_0320_3 HRGMv2_0320_3_15 18564 19328 - GT2
pfam HRGMv2_0320_3 HRGMv2_0320_3_16 19353 20444 - Epimerase | RmlD_sub_bind | GDP_Man_Dehyd
CAZyme HRGMv2_0320_3 HRGMv2_0320_3_17 20464 21582 - GT4
CAZyme HRGMv2_0320_3 HRGMv2_0320_3_18 21552 22676 - GT4
pfam HRGMv2_0320_3 HRGMv2_0320_3_19 22678 23730 - EpsG
pfam HRGMv2_0320_3 HRGMv2_0320_3_20 23878 24699 - LicD | LicD
TC HRGMv2_0320_3 HRGMv2_0320_3_21 24696 26123 - 2.A.66.2.6
Gene ID: HRGMv2_0320_3_11
Type: TC
Location: 14100 - 16016 (-)
Gene ID: HRGMv2_0320_3_12
Type: TC
Location: 16150 - 17124 (-)
Gene ID: HRGMv2_0320_3_13
Type: pfam
Location: 17159 - 17560 (-)
Gene ID: HRGMv2_0320_3_14
Type: pfam
Location: 17574 - 18530 (-)
Gene ID: HRGMv2_0320_3_15
Type: CAZyme
Location: 18564 - 19328 (-)
Gene ID: HRGMv2_0320_3_16
Type: pfam
Location: 19353 - 20444 (-)
Gene ID: HRGMv2_0320_3_17
Type: CAZyme
Location: 20464 - 21582 (-)
Gene ID: HRGMv2_0320_3_18
Type: CAZyme
Location: 21552 - 22676 (-)
Gene ID: HRGMv2_0320_3_19
Type: pfam
Location: 22678 - 23730 (-)
Gene ID: HRGMv2_0320_3_20
Type: pfam
Location: 23878 - 24699 (-)
Gene ID: HRGMv2_0320_3_21
Type: TC
Location: 24696 - 26123 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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