Cluster: HRGMv2_0319_CGC34
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0319
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0319_10 | HRGMv2_0319_10_23 | 30548 | 33811 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0319_10 | HRGMv2_0319_10_24 | 33840 | 36470 | - | DUF4953 | DUF5117 | DUF5118 |
| CAZyme | HRGMv2_0319_10 | HRGMv2_0319_10_25 | 36651 | 38720 | + | GH20 |
| NULL(UNKNOWN) | HRGMv2_0319_10 | HRGMv2_0319_10_26 | 39400 | 39504 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0319_10 | HRGMv2_0319_10_27 | 39532 | 40980 | + | Metallophos | PA14 |
| TC | HRGMv2_0319_10 | HRGMv2_0319_10_28 | 41068 | 44193 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0319_10 | HRGMv2_0319_10_29 | 44204 | 45784 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0319_10 | HRGMv2_0319_10_30 | 45924 | 48854 | + | GH92 |
| CAZyme | HRGMv2_0319_10 | HRGMv2_0319_10_31 | 48888 | 50504 | + | GH63 |
| CAZyme | HRGMv2_0319_10 | HRGMv2_0319_10_32 | 50517 | 51941 | + | GH125 |
| STP | HRGMv2_0319_10 | HRGMv2_0319_10_33 | 51974 | 52927 | + | Glucokinase |
| TC | HRGMv2_0319_10 | HRGMv2_0319_10_34 | 53008 | 53859 | - | 1.A.23.2.1 |
Gene ID: HRGMv2_0319_10_23
Type: TC
Location: 30548 - 33811 (-)
Type: TC
Location: 30548 - 33811 (-)
Gene ID: HRGMv2_0319_10_24
Type: pfam
Location: 33840 - 36470 (-)
Type: pfam
Location: 33840 - 36470 (-)
Gene ID: HRGMv2_0319_10_25
Type: CAZyme
Location: 36651 - 38720 (+)
Type: CAZyme
Location: 36651 - 38720 (+)
Gene ID: HRGMv2_0319_10_26
Type:
Location: 39400 - 39504 (+)
Type:
Location: 39400 - 39504 (+)
Gene ID: HRGMv2_0319_10_27
Type: pfam
Location: 39532 - 40980 (+)
Type: pfam
Location: 39532 - 40980 (+)
Gene ID: HRGMv2_0319_10_28
Type: TC
Location: 41068 - 44193 (+)
Type: TC
Location: 41068 - 44193 (+)
Gene ID: HRGMv2_0319_10_29
Type: pfam
Location: 44204 - 45784 (+)
Type: pfam
Location: 44204 - 45784 (+)
Gene ID: HRGMv2_0319_10_30
Type: CAZyme
Location: 45924 - 48854 (+)
Type: CAZyme
Location: 45924 - 48854 (+)
Gene ID: HRGMv2_0319_10_31
Type: CAZyme
Location: 48888 - 50504 (+)
Type: CAZyme
Location: 48888 - 50504 (+)
Gene ID: HRGMv2_0319_10_32
Type: CAZyme
Location: 50517 - 51941 (+)
Type: CAZyme
Location: 50517 - 51941 (+)
Gene ID: HRGMv2_0319_10_33
Type: STP
Location: 51974 - 52927 (+)
Type: STP
Location: 51974 - 52927 (+)
Gene ID: HRGMv2_0319_10_34
Type: TC
Location: 53008 - 53859 (-)
Type: TC
Location: 53008 - 53859 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900542985
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.