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Cluster: HRGMv2_0319_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0319_1 HRGMv2_0319_1_103 117647 119452 + 4.C.1.1.14
pfam HRGMv2_0319_1 HRGMv2_0319_1_104 119472 119963 + Thioredoxin | AhpC-TSA | Redoxin | Thioredoxin_2 | Thioredoxin_8
CAZyme HRGMv2_0319_1 HRGMv2_0319_1_105 120409 122640 - GH92
CAZyme HRGMv2_0319_1 HRGMv2_0319_1_106 122787 123758 - GH130_2
pfam HRGMv2_0319_1 HRGMv2_0319_1_107 123786 125165 - MFS_1
NULL(UNKNOWN) HRGMv2_0319_1 HRGMv2_0319_1_108 125189 125353 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0319_1 HRGMv2_0319_1_109 125428 127710 - GH92
CAZyme HRGMv2_0319_1 HRGMv2_0319_1_110 127721 130003 - GH92
CAZyme HRGMv2_0319_1 HRGMv2_0319_1_111 130054 132270 - GH92
TC HRGMv2_0319_1 HRGMv2_0319_1_112 132784 135969 + 1.B.14.6.13
TC HRGMv2_0319_1 HRGMv2_0319_1_113 135982 137571 + 8.A.46.2.2
pfam HRGMv2_0319_1 HRGMv2_0319_1_114 137602 138687 + GH18_BT1044-like
pfam HRGMv2_0319_1 HRGMv2_0319_1_115 138696 139844 + BT_3987-like_N | Laminin_G_3
CAZyme HRGMv2_0319_1 HRGMv2_0319_1_116 139878 141308 + GH18
pfam HRGMv2_0319_1 HRGMv2_0319_1_117 141388 142758 + F5_F8_type_C | DUF4989
TC HRGMv2_0319_1 HRGMv2_0319_1_118 142923 144272 + 2.A.66.1.45
Gene ID: HRGMv2_0319_1_103
Type: TC
Location: 117647 - 119452 (+)
Gene ID: HRGMv2_0319_1_104
Type: pfam
Location: 119472 - 119963 (+)
Gene ID: HRGMv2_0319_1_105
Type: CAZyme
Location: 120409 - 122640 (-)
Gene ID: HRGMv2_0319_1_106
Type: CAZyme
Location: 122787 - 123758 (-)
Gene ID: HRGMv2_0319_1_107
Type: pfam
Location: 123786 - 125165 (-)
Gene ID: HRGMv2_0319_1_108
Type:
Location: 125189 - 125353 (+)
Gene ID: HRGMv2_0319_1_109
Type: CAZyme
Location: 125428 - 127710 (-)
Gene ID: HRGMv2_0319_1_110
Type: CAZyme
Location: 127721 - 130003 (-)
Gene ID: HRGMv2_0319_1_111
Type: CAZyme
Location: 130054 - 132270 (-)
Gene ID: HRGMv2_0319_1_112
Type: TC
Location: 132784 - 135969 (+)
Gene ID: HRGMv2_0319_1_113
Type: TC
Location: 135982 - 137571 (+)
Gene ID: HRGMv2_0319_1_114
Type: pfam
Location: 137602 - 138687 (+)
Gene ID: HRGMv2_0319_1_115
Type: pfam
Location: 138696 - 139844 (+)
Gene ID: HRGMv2_0319_1_116
Type: CAZyme
Location: 139878 - 141308 (+)
Gene ID: HRGMv2_0319_1_117
Type: pfam
Location: 141388 - 142758 (+)
Gene ID: HRGMv2_0319_1_118
Type: TC
Location: 142923 - 144272 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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