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Cluster: HRGMv2_0312_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0312_1 HRGMv2_0312_1_253 323600 325513 + GH97
CAZyme HRGMv2_0312_1 HRGMv2_0312_1_254 325525 326724 + CE1
pfam HRGMv2_0312_1 HRGMv2_0312_1_255 326808 327791 - NTP_transferase | NTP_transf_3
pfam HRGMv2_0312_1 HRGMv2_0312_1_256 327788 328945 - CTP_transf_like | GHMP_kinases_C
TC HRGMv2_0312_1 HRGMv2_0312_1_257 328953 330176 - 2.A.1.7.2
pfam HRGMv2_0312_1 HRGMv2_0312_1_258 330218 331309 - Epimerase | RmlD_sub_bind | GDP_Man_Dehyd
CAZyme HRGMv2_0312_1 HRGMv2_0312_1_259 331472 332218 - GT26
CAZyme HRGMv2_0312_1 HRGMv2_0312_1_260 332345 333502 - GT4
Gene ID: HRGMv2_0312_1_253
Type: CAZyme
Location: 323600 - 325513 (+)
Gene ID: HRGMv2_0312_1_254
Type: CAZyme
Location: 325525 - 326724 (+)
Gene ID: HRGMv2_0312_1_255
Type: pfam
Location: 326808 - 327791 (-)
Gene ID: HRGMv2_0312_1_256
Type: pfam
Location: 327788 - 328945 (-)
Gene ID: HRGMv2_0312_1_257
Type: TC
Location: 328953 - 330176 (-)
Gene ID: HRGMv2_0312_1_258
Type: pfam
Location: 330218 - 331309 (-)
Gene ID: HRGMv2_0312_1_259
Type: CAZyme
Location: 331472 - 332218 (-)
Gene ID: HRGMv2_0312_1_260
Type: CAZyme
Location: 332345 - 333502 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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