Cluster: HRGMv2_0312_CGC38
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_0312
- CGC Family ID: CGCFAM_01593
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0312_20 | HRGMv2_0312_20_22 | 25762 | 26808 | + | GT2 |
| pfam | HRGMv2_0312_20 | HRGMv2_0312_20_23 | 26805 | 27485 | + | RadC | UPF0758_N |
| NULL(UNKNOWN) | HRGMv2_0312_20 | HRGMv2_0312_20_24 | 27488 | 29674 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0312_20 | HRGMv2_0312_20_25 | 29671 | 31929 | - | GH3 |
| pfam | HRGMv2_0312_20 | HRGMv2_0312_20_26 | 32062 | 33351 | - | SusF_SusE |
| CAZyme | HRGMv2_0312_20 | HRGMv2_0312_20_27 | 33401 | 34831 | - | GH27 |
| pfam | HRGMv2_0312_20 | HRGMv2_0312_20_28 | 34845 | 36401 | - | SusF_SusE | SusF_SusE |
| TC | HRGMv2_0312_20 | HRGMv2_0312_20_29 | 36462 | 38168 | - | 8.A.46.1.1 |
| TC | HRGMv2_0312_20 | HRGMv2_0312_20_30 | 38219 | 41518 | - | 1.B.14.6.1 |
| STP | HRGMv2_0312_20 | HRGMv2_0312_20_31 | 41726 | 42316 | + | Sigma70_r2 | Sigma70_r4_2 |
| STP | HRGMv2_0312_20 | HRGMv2_0312_20_32 | 42322 | 43341 | + | FecR |
| CAZyme | HRGMv2_0312_20 | HRGMv2_0312_20_33 | 43408 | 44403 | + | GH43_34 |
| CAZyme | HRGMv2_0312_20 | HRGMv2_0312_20_34 | 44476 | 45660 | - | GH3 |
| sulfatase | HRGMv2_0312_20 | HRGMv2_0312_20_35 | 45664 | 47238 | - | S1_14 |
| pfam | HRGMv2_0312_20 | HRGMv2_0312_20_36 | 47238 | 48749 | - | Phosphodiest | Metalloenzyme | iPGM_N |
| CAZyme | HRGMv2_0312_20 | HRGMv2_0312_20_37 | 48898 | 49743 | + | GT2 |
| CAZyme | HRGMv2_0312_20 | HRGMv2_0312_20_38 | 49778 | 50857 | + | GT4 |
Gene ID: HRGMv2_0312_20_22
Type: CAZyme
Location: 25762 - 26808 (+)
Type: CAZyme
Location: 25762 - 26808 (+)
Gene ID: HRGMv2_0312_20_23
Type: pfam
Location: 26805 - 27485 (+)
Type: pfam
Location: 26805 - 27485 (+)
Gene ID: HRGMv2_0312_20_24
Type:
Location: 27488 - 29674 (-)
Type:
Location: 27488 - 29674 (-)
Gene ID: HRGMv2_0312_20_25
Type: CAZyme
Location: 29671 - 31929 (-)
Type: CAZyme
Location: 29671 - 31929 (-)
Gene ID: HRGMv2_0312_20_26
Type: pfam
Location: 32062 - 33351 (-)
Type: pfam
Location: 32062 - 33351 (-)
Gene ID: HRGMv2_0312_20_27
Type: CAZyme
Location: 33401 - 34831 (-)
Type: CAZyme
Location: 33401 - 34831 (-)
Gene ID: HRGMv2_0312_20_28
Type: pfam
Location: 34845 - 36401 (-)
Type: pfam
Location: 34845 - 36401 (-)
Gene ID: HRGMv2_0312_20_29
Type: TC
Location: 36462 - 38168 (-)
Type: TC
Location: 36462 - 38168 (-)
Gene ID: HRGMv2_0312_20_30
Type: TC
Location: 38219 - 41518 (-)
Type: TC
Location: 38219 - 41518 (-)
Gene ID: HRGMv2_0312_20_31
Type: STP
Location: 41726 - 42316 (+)
Type: STP
Location: 41726 - 42316 (+)
Gene ID: HRGMv2_0312_20_32
Type: STP
Location: 42322 - 43341 (+)
Type: STP
Location: 42322 - 43341 (+)
Gene ID: HRGMv2_0312_20_33
Type: CAZyme
Location: 43408 - 44403 (+)
Type: CAZyme
Location: 43408 - 44403 (+)
Gene ID: HRGMv2_0312_20_34
Type: CAZyme
Location: 44476 - 45660 (-)
Type: CAZyme
Location: 44476 - 45660 (-)
Gene ID: HRGMv2_0312_20_35
Type: sulfatase
Location: 45664 - 47238 (-)
Type: sulfatase
Location: 45664 - 47238 (-)
Gene ID: HRGMv2_0312_20_36
Type: pfam
Location: 47238 - 48749 (-)
Type: pfam
Location: 47238 - 48749 (-)
Gene ID: HRGMv2_0312_20_37
Type: CAZyme
Location: 48898 - 49743 (+)
Type: CAZyme
Location: 48898 - 49743 (+)
Gene ID: HRGMv2_0312_20_38
Type: CAZyme
Location: 49778 - 50857 (+)
Type: CAZyme
Location: 49778 - 50857 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Species
Lepagella sp900760735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.