Cluster: HRGMv2_0312_CGC30
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0312
- CGC Family ID: CGCFAM_02871
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0312_12 | HRGMv2_0312_12_33 | 57333 | 59873 | - | CBM67 | GH78 |
| sulfatase | HRGMv2_0312_12 | HRGMv2_0312_12_34 | 59885 | 62338 | - | S1_4 |
| TF | HRGMv2_0312_12 | HRGMv2_0312_12_35 | 62618 | 66664 | + | HTH_AraC |
| CAZyme | HRGMv2_0312_12 | HRGMv2_0312_12_36 | 66802 | 68265 | + | GH125 |
| pfam | HRGMv2_0312_12 | HRGMv2_0312_12_37 | 68328 | 69236 | + | Exo_endo_phos |
| CAZyme | HRGMv2_0312_12 | HRGMv2_0312_12_38 | 69320 | 70282 | + | GH43_34 |
| CAZyme | HRGMv2_0312_12 | HRGMv2_0312_12_39 | 70385 | 72970 | + | GH115 |
| TC | HRGMv2_0312_12 | HRGMv2_0312_12_40 | 73017 | 73376 | + | 1.E.14.1.13 |
| TC | HRGMv2_0312_12 | HRGMv2_0312_12_41 | 73381 | 74076 | + | 2.A.122.1.1 |
| TF | HRGMv2_0312_12 | HRGMv2_0312_12_42 | 74293 | 75930 | + | 0037767 |
| pfam | HRGMv2_0312_12 | HRGMv2_0312_12_43 | 75959 | 77029 | + | Radical_SAM | SPASM |
| TC | HRGMv2_0312_12 | HRGMv2_0312_12_44 | 77051 | 78007 | - | 8.A.5.1.3 |
| CAZyme | HRGMv2_0312_12 | HRGMv2_0312_12_45 | 78118 | 80298 | - | GH36 |
| TC | HRGMv2_0312_12 | HRGMv2_0312_12_46 | 80340 | 82283 | - | 8.A.46.1.5 |
| TC | HRGMv2_0312_12 | HRGMv2_0312_12_47 | 82310 | 85630 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0312_12_33
Type: CAZyme
Location: 57333 - 59873 (-)
Type: CAZyme
Location: 57333 - 59873 (-)
Gene ID: HRGMv2_0312_12_34
Type: sulfatase
Location: 59885 - 62338 (-)
Type: sulfatase
Location: 59885 - 62338 (-)
Gene ID: HRGMv2_0312_12_35
Type: TF
Location: 62618 - 66664 (+)
Type: TF
Location: 62618 - 66664 (+)
Gene ID: HRGMv2_0312_12_36
Type: CAZyme
Location: 66802 - 68265 (+)
Type: CAZyme
Location: 66802 - 68265 (+)
Gene ID: HRGMv2_0312_12_37
Type: pfam
Location: 68328 - 69236 (+)
Type: pfam
Location: 68328 - 69236 (+)
Gene ID: HRGMv2_0312_12_38
Type: CAZyme
Location: 69320 - 70282 (+)
Type: CAZyme
Location: 69320 - 70282 (+)
Gene ID: HRGMv2_0312_12_39
Type: CAZyme
Location: 70385 - 72970 (+)
Type: CAZyme
Location: 70385 - 72970 (+)
Gene ID: HRGMv2_0312_12_40
Type: TC
Location: 73017 - 73376 (+)
Type: TC
Location: 73017 - 73376 (+)
Gene ID: HRGMv2_0312_12_41
Type: TC
Location: 73381 - 74076 (+)
Type: TC
Location: 73381 - 74076 (+)
Gene ID: HRGMv2_0312_12_42
Type: TF
Location: 74293 - 75930 (+)
Type: TF
Location: 74293 - 75930 (+)
Gene ID: HRGMv2_0312_12_43
Type: pfam
Location: 75959 - 77029 (+)
Type: pfam
Location: 75959 - 77029 (+)
Gene ID: HRGMv2_0312_12_44
Type: TC
Location: 77051 - 78007 (-)
Type: TC
Location: 77051 - 78007 (-)
Gene ID: HRGMv2_0312_12_45
Type: CAZyme
Location: 78118 - 80298 (-)
Type: CAZyme
Location: 78118 - 80298 (-)
Gene ID: HRGMv2_0312_12_46
Type: TC
Location: 80340 - 82283 (-)
Type: TC
Location: 80340 - 82283 (-)
Gene ID: HRGMv2_0312_12_47
Type: TC
Location: 82310 - 85630 (-)
Type: TC
Location: 82310 - 85630 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Species
Lepagella sp900760735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.