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Cluster: HRGMv2_0312_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0312_12 HRGMv2_0312_12_4 3349 4341 + GH43_34
STP HRGMv2_0312_12 HRGMv2_0312_12_5 4346 5431 + FecR
TC HRGMv2_0312_12 HRGMv2_0312_12_6 5768 9130 + 1.B.14.6.1
TC HRGMv2_0312_12 HRGMv2_0312_12_7 9179 11041 + 8.A.46.1.5
CAZyme HRGMv2_0312_12 HRGMv2_0312_12_8 11144 12559 + GH28
CAZyme HRGMv2_0312_12 HRGMv2_0312_12_9 12576 14459 + GH127
pfam HRGMv2_0312_12 HRGMv2_0312_12_10 14522 14869 + Glyco_hydro_3
sulfatase HRGMv2_0312_12 HRGMv2_0312_12_11 14869 16497 + S1_15
CAZyme HRGMv2_0312_12 HRGMv2_0312_12_12 16516 18885 + GH3
Gene ID: HRGMv2_0312_12_4
Type: CAZyme
Location: 3349 - 4341 (+)
Gene ID: HRGMv2_0312_12_5
Type: STP
Location: 4346 - 5431 (+)
Gene ID: HRGMv2_0312_12_6
Type: TC
Location: 5768 - 9130 (+)
Gene ID: HRGMv2_0312_12_7
Type: TC
Location: 9179 - 11041 (+)
Gene ID: HRGMv2_0312_12_8
Type: CAZyme
Location: 11144 - 12559 (+)
Gene ID: HRGMv2_0312_12_9
Type: CAZyme
Location: 12576 - 14459 (+)
Gene ID: HRGMv2_0312_12_10
Type: pfam
Location: 14522 - 14869 (+)
Gene ID: HRGMv2_0312_12_11
Type: sulfatase
Location: 14869 - 16497 (+)
Gene ID: HRGMv2_0312_12_12
Type: CAZyme
Location: 16516 - 18885 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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