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Cluster: HRGMv2_0312_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0312_10 HRGMv2_0312_10_39 47453 50509 - 1.B.14.6.1
TF HRGMv2_0312_10 HRGMv2_0312_10_40 50554 54504 - HTH_AraC
sulfatase HRGMv2_0312_10 HRGMv2_0312_10_41 54665 56050 - S1_27
TC HRGMv2_0312_10 HRGMv2_0312_10_42 56072 57037 - 2.A.19.5.2
pfam HRGMv2_0312_10 HRGMv2_0312_10_43 57361 58698 - AAA_14 | DUF4143
pfam HRGMv2_0312_10 HRGMv2_0312_10_44 58963 59925 + DUF362
TC HRGMv2_0312_10 HRGMv2_0312_10_45 59932 61854 + 1.B.14.3.1
CAZyme HRGMv2_0312_10 HRGMv2_0312_10_46 61946 63796 + GH128
TF HRGMv2_0312_10 HRGMv2_0312_10_47 64185 66926 + HTH_AraC
TF HRGMv2_0312_10 HRGMv2_0312_10_48 67154 67669 + HTH_5
TC HRGMv2_0312_10 HRGMv2_0312_10_49 67764 70940 + 1.B.14.6.1
Gene ID: HRGMv2_0312_10_39
Type: TC
Location: 47453 - 50509 (-)
Gene ID: HRGMv2_0312_10_40
Type: TF
Location: 50554 - 54504 (-)
Gene ID: HRGMv2_0312_10_41
Type: sulfatase
Location: 54665 - 56050 (-)
Gene ID: HRGMv2_0312_10_42
Type: TC
Location: 56072 - 57037 (-)
Gene ID: HRGMv2_0312_10_43
Type: pfam
Location: 57361 - 58698 (-)
Gene ID: HRGMv2_0312_10_44
Type: pfam
Location: 58963 - 59925 (+)
Gene ID: HRGMv2_0312_10_45
Type: TC
Location: 59932 - 61854 (+)
Gene ID: HRGMv2_0312_10_46
Type: CAZyme
Location: 61946 - 63796 (+)
Gene ID: HRGMv2_0312_10_47
Type: TF
Location: 64185 - 66926 (+)
Gene ID: HRGMv2_0312_10_48
Type: TF
Location: 67154 - 67669 (+)
Gene ID: HRGMv2_0312_10_49
Type: TC
Location: 67764 - 70940 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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