Cluster: HRGMv2_0312_CGC23
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_0312
- CGC Family ID: CGCFAM_00544
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0312_8 | HRGMv2_0312_8_37 | 49261 | 51405 | - | GH36 |
| TF | HRGMv2_0312_8 | HRGMv2_0312_8_38 | 51555 | 51854 | - | HTH_AraC |
| STP | HRGMv2_0312_8 | HRGMv2_0312_8_39 | 51830 | 55585 | - | HATPase_c | HisKA | Reg_prop | Response_reg | Y_Y_Y |
| CAZyme | HRGMv2_0312_8 | HRGMv2_0312_8_40 | 55596 | 57773 | - | GH92 |
| CAZyme | HRGMv2_0312_8 | HRGMv2_0312_8_41 | 57792 | 60206 | - | GH36 |
| pfam | HRGMv2_0312_8 | HRGMv2_0312_8_42 | 60365 | 62092 | - | FG-GAP_3 | FG-GAP_3 | FG-GAP_3 | FG-GAP_3 | FG-GAP_3 | FG-GAP_3 |
| pfam | HRGMv2_0312_8 | HRGMv2_0312_8_43 | 62206 | 63795 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0312_8 | HRGMv2_0312_8_44 | 63814 | 66927 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0312_8 | HRGMv2_0312_8_45 | 67093 | 69672 | - | GH2 |
| CAZyme | HRGMv2_0312_8 | HRGMv2_0312_8_46 | 69669 | 72011 | - | GH95 |
| CAZyme | HRGMv2_0312_8 | HRGMv2_0312_8_47 | 72333 | 74258 | + | CE20 | CE20 |
| CAZyme | HRGMv2_0312_8 | HRGMv2_0312_8_48 | 74315 | 77065 | + | GH92 |
| TC | HRGMv2_0312_8 | HRGMv2_0312_8_49 | 77117 | 77905 | - | 9.B.186.1.3 |
| pfam | HRGMv2_0312_8 | HRGMv2_0312_8_50 | 78639 | 79292 | - | UPF0020 | MTS | PrmA | Methyltransf_25 |
| STP | HRGMv2_0312_8 | HRGMv2_0312_8_51 | 79462 | 81909 | + | AAA |
| TC | HRGMv2_0312_8 | HRGMv2_0312_8_52 | 81998 | 83275 | - | 3.A.18.1.1 |
Gene ID: HRGMv2_0312_8_37
Type: CAZyme
Location: 49261 - 51405 (-)
Type: CAZyme
Location: 49261 - 51405 (-)
Gene ID: HRGMv2_0312_8_38
Type: TF
Location: 51555 - 51854 (-)
Type: TF
Location: 51555 - 51854 (-)
Gene ID: HRGMv2_0312_8_39
Type: STP
Location: 51830 - 55585 (-)
Type: STP
Location: 51830 - 55585 (-)
Gene ID: HRGMv2_0312_8_40
Type: CAZyme
Location: 55596 - 57773 (-)
Type: CAZyme
Location: 55596 - 57773 (-)
Gene ID: HRGMv2_0312_8_41
Type: CAZyme
Location: 57792 - 60206 (-)
Type: CAZyme
Location: 57792 - 60206 (-)
Gene ID: HRGMv2_0312_8_42
Type: pfam
Location: 60365 - 62092 (-)
Type: pfam
Location: 60365 - 62092 (-)
Gene ID: HRGMv2_0312_8_43
Type: pfam
Location: 62206 - 63795 (-)
Type: pfam
Location: 62206 - 63795 (-)
Gene ID: HRGMv2_0312_8_44
Type: TC
Location: 63814 - 66927 (-)
Type: TC
Location: 63814 - 66927 (-)
Gene ID: HRGMv2_0312_8_45
Type: CAZyme
Location: 67093 - 69672 (-)
Type: CAZyme
Location: 67093 - 69672 (-)
Gene ID: HRGMv2_0312_8_46
Type: CAZyme
Location: 69669 - 72011 (-)
Type: CAZyme
Location: 69669 - 72011 (-)
Gene ID: HRGMv2_0312_8_47
Type: CAZyme
Location: 72333 - 74258 (+)
Type: CAZyme
Location: 72333 - 74258 (+)
Gene ID: HRGMv2_0312_8_48
Type: CAZyme
Location: 74315 - 77065 (+)
Type: CAZyme
Location: 74315 - 77065 (+)
Gene ID: HRGMv2_0312_8_49
Type: TC
Location: 77117 - 77905 (-)
Type: TC
Location: 77117 - 77905 (-)
Gene ID: HRGMv2_0312_8_50
Type: pfam
Location: 78639 - 79292 (-)
Type: pfam
Location: 78639 - 79292 (-)
Gene ID: HRGMv2_0312_8_51
Type: STP
Location: 79462 - 81909 (+)
Type: STP
Location: 79462 - 81909 (+)
Gene ID: HRGMv2_0312_8_52
Type: TC
Location: 81998 - 83275 (-)
Type: TC
Location: 81998 - 83275 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Species
Lepagella sp900760735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.