Cluster: HRGMv2_0312_CGC19
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0312
- CGC Family ID: CGCFAM_00574
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0312_7 | HRGMv2_0312_7_4 | 4940 | 7417 | - | GH2 |
| CAZyme | HRGMv2_0312_7 | HRGMv2_0312_7_5 | 7499 | 10381 | - | GH31_4 |
| TF | HRGMv2_0312_7 | HRGMv2_0312_7_6 | 10631 | 14635 | - | HTH_AraC | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_0312_7 | HRGMv2_0312_7_7 | 14702 | 14794 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0312_7 | HRGMv2_0312_7_8 | 15045 | 18212 | + | 1.B.14.6.1 |
| TC | HRGMv2_0312_7 | HRGMv2_0312_7_9 | 18290 | 19957 | + | 8.A.46.1.2 |
| NULL(UNKNOWN) | HRGMv2_0312_7 | HRGMv2_0312_7_10 | 20036 | 21811 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0312_7 | HRGMv2_0312_7_11 | 21825 | 23951 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0312_7 | HRGMv2_0312_7_12 | 23977 | 25707 | + | GH5_4 |
| pfam | HRGMv2_0312_7 | HRGMv2_0312_7_13 | 25893 | 27374 | + | FGGY_N | FGGY_C |
| pfam | HRGMv2_0312_7 | HRGMv2_0312_7_14 | 27395 | 28714 | + | AP_endonuc_2 |
| TC | HRGMv2_0312_7 | HRGMv2_0312_7_15 | 28824 | 30296 | + | 2.A.1.1.3 |
| TF | HRGMv2_0312_7 | HRGMv2_0312_7_16 | 30397 | 31371 | + | GerE |
| NULL(UNKNOWN) | HRGMv2_0312_7 | HRGMv2_0312_7_17 | 31512 | 32819 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0312_7 | HRGMv2_0312_7_18 | 32951 | 33682 | + | 9.B.20.1.4 |
Gene ID: HRGMv2_0312_7_4
Type: CAZyme
Location: 4940 - 7417 (-)
Type: CAZyme
Location: 4940 - 7417 (-)
Gene ID: HRGMv2_0312_7_5
Type: CAZyme
Location: 7499 - 10381 (-)
Type: CAZyme
Location: 7499 - 10381 (-)
Gene ID: HRGMv2_0312_7_6
Type: TF
Location: 10631 - 14635 (-)
Type: TF
Location: 10631 - 14635 (-)
Gene ID: HRGMv2_0312_7_7
Type:
Location: 14702 - 14794 (-)
Type:
Location: 14702 - 14794 (-)
Gene ID: HRGMv2_0312_7_8
Type: TC
Location: 15045 - 18212 (+)
Type: TC
Location: 15045 - 18212 (+)
Gene ID: HRGMv2_0312_7_9
Type: TC
Location: 18290 - 19957 (+)
Type: TC
Location: 18290 - 19957 (+)
Gene ID: HRGMv2_0312_7_10
Type:
Location: 20036 - 21811 (+)
Type:
Location: 20036 - 21811 (+)
Gene ID: HRGMv2_0312_7_11
Type:
Location: 21825 - 23951 (+)
Type:
Location: 21825 - 23951 (+)
Gene ID: HRGMv2_0312_7_12
Type: CAZyme
Location: 23977 - 25707 (+)
Type: CAZyme
Location: 23977 - 25707 (+)
Gene ID: HRGMv2_0312_7_13
Type: pfam
Location: 25893 - 27374 (+)
Type: pfam
Location: 25893 - 27374 (+)
Gene ID: HRGMv2_0312_7_14
Type: pfam
Location: 27395 - 28714 (+)
Type: pfam
Location: 27395 - 28714 (+)
Gene ID: HRGMv2_0312_7_15
Type: TC
Location: 28824 - 30296 (+)
Type: TC
Location: 28824 - 30296 (+)
Gene ID: HRGMv2_0312_7_16
Type: TF
Location: 30397 - 31371 (+)
Type: TF
Location: 30397 - 31371 (+)
Gene ID: HRGMv2_0312_7_17
Type:
Location: 31512 - 32819 (+)
Type:
Location: 31512 - 32819 (+)
Gene ID: HRGMv2_0312_7_18
Type: TC
Location: 32951 - 33682 (+)
Type: TC
Location: 32951 - 33682 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Species
Lepagella sp900760735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.