Cluster: HRGMv2_0311_CGC39
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0311
- CGC Family ID: CGCFAM_02949
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0311_27 | HRGMv2_0311_27_12 | 8407 | 9591 | - | 2.A.1.7.17 |
| CAZyme | HRGMv2_0311_27 | HRGMv2_0311_27_13 | 9613 | 11472 | - | GH32 |
| TF | HRGMv2_0311_27 | HRGMv2_0311_27_14 | 11655 | 14393 | + | HTH_AraC |
| TC | HRGMv2_0311_27 | HRGMv2_0311_27_15 | 14516 | 17638 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0311_27 | HRGMv2_0311_27_16 | 17660 | 19396 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0311_27 | HRGMv2_0311_27_17 | 19528 | 20523 | - | GH43_17 |
| NULL(UNKNOWN) | HRGMv2_0311_27 | HRGMv2_0311_27_18 | 20647 | 21054 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0311_27 | HRGMv2_0311_27_19 | 21511 | 21633 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0311_27 | HRGMv2_0311_27_20 | 22247 | 23203 | + | 8.A.5.1.6 |
| TF | HRGMv2_0311_27 | HRGMv2_0311_27_21 | 23225 | 23659 | - | 0040517 |
| TC | HRGMv2_0311_27 | HRGMv2_0311_27_22 | 23710 | 24405 | - | 2.A.122.1.1 |
| TC | HRGMv2_0311_27 | HRGMv2_0311_27_23 | 24410 | 24769 | - | 1.E.14.1.13 |
Gene ID: HRGMv2_0311_27_12
Type: TC
Location: 8407 - 9591 (-)
Type: TC
Location: 8407 - 9591 (-)
Gene ID: HRGMv2_0311_27_13
Type: CAZyme
Location: 9613 - 11472 (-)
Type: CAZyme
Location: 9613 - 11472 (-)
Gene ID: HRGMv2_0311_27_14
Type: TF
Location: 11655 - 14393 (+)
Type: TF
Location: 11655 - 14393 (+)
Gene ID: HRGMv2_0311_27_15
Type: TC
Location: 14516 - 17638 (+)
Type: TC
Location: 14516 - 17638 (+)
Gene ID: HRGMv2_0311_27_16
Type: pfam
Location: 17660 - 19396 (+)
Type: pfam
Location: 17660 - 19396 (+)
Gene ID: HRGMv2_0311_27_17
Type: CAZyme
Location: 19528 - 20523 (-)
Type: CAZyme
Location: 19528 - 20523 (-)
Gene ID: HRGMv2_0311_27_18
Type:
Location: 20647 - 21054 (-)
Type:
Location: 20647 - 21054 (-)
Gene ID: HRGMv2_0311_27_19
Type:
Location: 21511 - 21633 (-)
Type:
Location: 21511 - 21633 (-)
Gene ID: HRGMv2_0311_27_20
Type: TC
Location: 22247 - 23203 (+)
Type: TC
Location: 22247 - 23203 (+)
Gene ID: HRGMv2_0311_27_21
Type: TF
Location: 23225 - 23659 (-)
Type: TF
Location: 23225 - 23659 (-)
Gene ID: HRGMv2_0311_27_22
Type: TC
Location: 23710 - 24405 (-)
Type: TC
Location: 23710 - 24405 (-)
Gene ID: HRGMv2_0311_27_23
Type: TC
Location: 24410 - 24769 (-)
Type: TC
Location: 24410 - 24769 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.