Cluster: HRGMv2_0311_CGC12
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0311
- CGC Family ID: CGCFAM_01250
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0311_7 | HRGMv2_0311_7_13 | 14864 | 16465 | - | GH16_3 |
| NULL(UNKNOWN) | HRGMv2_0311_7 | HRGMv2_0311_7_14 | 16536 | 17348 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0311_7 | HRGMv2_0311_7_15 | 17477 | 19585 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0311_7 | HRGMv2_0311_7_16 | 19601 | 22891 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | HRGMv2_0311_7 | HRGMv2_0311_7_17 | 22915 | 23007 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0311_7 | HRGMv2_0311_7_18 | 23489 | 27619 | + | HTH_AraC |
| CAZyme | HRGMv2_0311_7 | HRGMv2_0311_7_19 | 27692 | 30001 | + | GH105 | GH154 |
| CAZyme | HRGMv2_0311_7 | HRGMv2_0311_7_20 | 30124 | 31713 | + | CBM32 | GH43_24 |
| CAZyme | HRGMv2_0311_7 | HRGMv2_0311_7_21 | 31771 | 33387 | - | CE20 | CE20 |
| STP | HRGMv2_0311_7 | HRGMv2_0311_7_22 | 33713 | 34225 | + | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | HRGMv2_0311_7 | HRGMv2_0311_7_23 | 34296 | 35891 | + | GH43_35 |
| CAZyme | HRGMv2_0311_7 | HRGMv2_0311_7_24 | 35919 | 38366 | + | GH95 |
Gene ID: HRGMv2_0311_7_13
Type: CAZyme
Location: 14864 - 16465 (-)
Type: CAZyme
Location: 14864 - 16465 (-)
Gene ID: HRGMv2_0311_7_14
Type:
Location: 16536 - 17348 (-)
Type:
Location: 16536 - 17348 (-)
Gene ID: HRGMv2_0311_7_15
Type: pfam
Location: 17477 - 19585 (-)
Type: pfam
Location: 17477 - 19585 (-)
Gene ID: HRGMv2_0311_7_16
Type: TC
Location: 19601 - 22891 (-)
Type: TC
Location: 19601 - 22891 (-)
Gene ID: HRGMv2_0311_7_17
Type:
Location: 22915 - 23007 (-)
Type:
Location: 22915 - 23007 (-)
Gene ID: HRGMv2_0311_7_18
Type: TF
Location: 23489 - 27619 (+)
Type: TF
Location: 23489 - 27619 (+)
Gene ID: HRGMv2_0311_7_19
Type: CAZyme
Location: 27692 - 30001 (+)
Type: CAZyme
Location: 27692 - 30001 (+)
Gene ID: HRGMv2_0311_7_20
Type: CAZyme
Location: 30124 - 31713 (+)
Type: CAZyme
Location: 30124 - 31713 (+)
Gene ID: HRGMv2_0311_7_21
Type: CAZyme
Location: 31771 - 33387 (-)
Type: CAZyme
Location: 31771 - 33387 (-)
Gene ID: HRGMv2_0311_7_22
Type: STP
Location: 33713 - 34225 (+)
Type: STP
Location: 33713 - 34225 (+)
Gene ID: HRGMv2_0311_7_23
Type: CAZyme
Location: 34296 - 35891 (+)
Type: CAZyme
Location: 34296 - 35891 (+)
Gene ID: HRGMv2_0311_7_24
Type: CAZyme
Location: 35919 - 38366 (+)
Type: CAZyme
Location: 35919 - 38366 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.