Cluster: HRGMv2_0308_CGC52
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_0308
- CGC Family ID: CGCFAM_00001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0308_92 | HRGMv2_0308_92_1 | 2 | 1819 | - | GH36 |
| NULL(UNKNOWN) | HRGMv2_0308_92 | HRGMv2_0308_92_2 | 1830 | 2354 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0308_92 | HRGMv2_0308_92_3 | 2486 | 4954 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0308_92 | HRGMv2_0308_92_4 | 4982 | 6496 | - | GH30 |
| pfam | HRGMv2_0308_92 | HRGMv2_0308_92_5 | 6575 | 8281 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0308_92 | HRGMv2_0308_92_6 | 8288 | 11659 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0308_92_1
Type: CAZyme
Location: 2 - 1819 (-)
Type: CAZyme
Location: 2 - 1819 (-)
Gene ID: HRGMv2_0308_92_2
Type:
Location: 1830 - 2354 (-)
Type:
Location: 1830 - 2354 (-)
Gene ID: HRGMv2_0308_92_3
Type:
Location: 2486 - 4954 (-)
Type:
Location: 2486 - 4954 (-)
Gene ID: HRGMv2_0308_92_4
Type: CAZyme
Location: 4982 - 6496 (-)
Type: CAZyme
Location: 4982 - 6496 (-)
Gene ID: HRGMv2_0308_92_5
Type: pfam
Location: 6575 - 8281 (-)
Type: pfam
Location: 6575 - 8281 (-)
Gene ID: HRGMv2_0308_92_6
Type: TC
Location: 8288 - 11659 (-)
Type: TC
Location: 8288 - 11659 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.