Cluster: HRGMv2_0308_CGC25
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_0308
- CGC Family ID: CGCFAM_00217
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0308_19 | HRGMv2_0308_19_5 | 4205 | 6238 | - | GH97 |
| TC | HRGMv2_0308_19 | HRGMv2_0308_19_6 | 6243 | 7202 | - | 8.A.5.1.6 |
| CAZyme | HRGMv2_0308_19 | HRGMv2_0308_19_7 | 7213 | 10053 | - | GH43_19 | GH43_29 | GH43_34 |
| pfam | HRGMv2_0308_19 | HRGMv2_0308_19_8 | 10163 | 12163 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0308_19 | HRGMv2_0308_19_9 | 12175 | 15468 | - | 1.B.14.6.1 |
| TF | HRGMv2_0308_19 | HRGMv2_0308_19_10 | 15710 | 19750 | + | HTH_AraC |
| CAZyme | HRGMv2_0308_19 | HRGMv2_0308_19_11 | 19752 | 21824 | + | GH43_19 | GH43_24 |
| CAZyme | HRGMv2_0308_19 | HRGMv2_0308_19_12 | 21837 | 24149 | + | GH105 | GH154 |
| CAZyme | HRGMv2_0308_19 | HRGMv2_0308_19_13 | 24159 | 26522 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_0308_19 | HRGMv2_0308_19_14 | 26656 | 26802 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0308_19 | HRGMv2_0308_19_15 | 27219 | 28841 | - | GH39 |
| CAZyme | HRGMv2_0308_19 | HRGMv2_0308_19_16 | 28847 | 31231 | - | GH51 |
| NULL(UNKNOWN) | HRGMv2_0308_19 | HRGMv2_0308_19_17 | 31241 | 32827 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0308_19 | HRGMv2_0308_19_18 | 33131 | 34600 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0308_19 | HRGMv2_0308_19_19 | 34896 | 38480 | - | GH106 |
Gene ID: HRGMv2_0308_19_5
Type: CAZyme
Location: 4205 - 6238 (-)
Type: CAZyme
Location: 4205 - 6238 (-)
Gene ID: HRGMv2_0308_19_6
Type: TC
Location: 6243 - 7202 (-)
Type: TC
Location: 6243 - 7202 (-)
Gene ID: HRGMv2_0308_19_7
Type: CAZyme
Location: 7213 - 10053 (-)
Type: CAZyme
Location: 7213 - 10053 (-)
Gene ID: HRGMv2_0308_19_8
Type: pfam
Location: 10163 - 12163 (-)
Type: pfam
Location: 10163 - 12163 (-)
Gene ID: HRGMv2_0308_19_9
Type: TC
Location: 12175 - 15468 (-)
Type: TC
Location: 12175 - 15468 (-)
Gene ID: HRGMv2_0308_19_10
Type: TF
Location: 15710 - 19750 (+)
Type: TF
Location: 15710 - 19750 (+)
Gene ID: HRGMv2_0308_19_11
Type: CAZyme
Location: 19752 - 21824 (+)
Type: CAZyme
Location: 19752 - 21824 (+)
Gene ID: HRGMv2_0308_19_12
Type: CAZyme
Location: 21837 - 24149 (+)
Type: CAZyme
Location: 21837 - 24149 (+)
Gene ID: HRGMv2_0308_19_13
Type: CAZyme
Location: 24159 - 26522 (+)
Type: CAZyme
Location: 24159 - 26522 (+)
Gene ID: HRGMv2_0308_19_14
Type:
Location: 26656 - 26802 (+)
Type:
Location: 26656 - 26802 (+)
Gene ID: HRGMv2_0308_19_15
Type: CAZyme
Location: 27219 - 28841 (-)
Type: CAZyme
Location: 27219 - 28841 (-)
Gene ID: HRGMv2_0308_19_16
Type: CAZyme
Location: 28847 - 31231 (-)
Type: CAZyme
Location: 28847 - 31231 (-)
Gene ID: HRGMv2_0308_19_17
Type:
Location: 31241 - 32827 (-)
Type:
Location: 31241 - 32827 (-)
Gene ID: HRGMv2_0308_19_18
Type:
Location: 33131 - 34600 (-)
Type:
Location: 33131 - 34600 (-)
Gene ID: HRGMv2_0308_19_19
Type: CAZyme
Location: 34896 - 38480 (-)
Type: CAZyme
Location: 34896 - 38480 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.