Cluster: HRGMv2_0307_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0307
- CGC Family ID: CGCFAM_04390
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0307_1 | HRGMv2_0307_1_11 | 11958 | 13316 | - | GH177 |
| TC | HRGMv2_0307_1 | HRGMv2_0307_1_12 | 13588 | 15084 | - | 9.A.25.1.1 |
| pfam | HRGMv2_0307_1 | HRGMv2_0307_1_13 | 15424 | 16596 | - | GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3 |
| pfam | HRGMv2_0307_1 | HRGMv2_0307_1_14 | 16965 | 17258 | - | P-II |
| TC | HRGMv2_0307_1 | HRGMv2_0307_1_15 | 17258 | 19963 | - | 2.A.6.3.6 |
| TC | HRGMv2_0307_1 | HRGMv2_0307_1_16 | 19976 | 20362 | - | 2.A.6.3.5 |
| TC | HRGMv2_0307_1 | HRGMv2_0307_1_17 | 20366 | 21391 | - | 2.A.6.2.27 |
Gene ID: HRGMv2_0307_1_11
Type: CAZyme
Location: 11958 - 13316 (-)
Type: CAZyme
Location: 11958 - 13316 (-)
Gene ID: HRGMv2_0307_1_12
Type: TC
Location: 13588 - 15084 (-)
Type: TC
Location: 13588 - 15084 (-)
Gene ID: HRGMv2_0307_1_13
Type: pfam
Location: 15424 - 16596 (-)
Type: pfam
Location: 15424 - 16596 (-)
Gene ID: HRGMv2_0307_1_14
Type: pfam
Location: 16965 - 17258 (-)
Type: pfam
Location: 16965 - 17258 (-)
Gene ID: HRGMv2_0307_1_15
Type: TC
Location: 17258 - 19963 (-)
Type: TC
Location: 17258 - 19963 (-)
Gene ID: HRGMv2_0307_1_16
Type: TC
Location: 19976 - 20362 (-)
Type: TC
Location: 19976 - 20362 (-)
Gene ID: HRGMv2_0307_1_17
Type: TC
Location: 20366 - 21391 (-)
Type: TC
Location: 20366 - 21391 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.