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Cluster: HRGMv2_0305_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0305_32 HRGMv2_0305_32_4 8413 10425 + GH182
CAZyme HRGMv2_0305_32 HRGMv2_0305_32_5 10566 12389 + GH43_3 | GH43_31
CAZyme HRGMv2_0305_32 HRGMv2_0305_32_6 13242 14231 - GH43_34
pfam HRGMv2_0305_32 HRGMv2_0305_32_7 14533 14751 + TatA_B_E
TC HRGMv2_0305_32 HRGMv2_0305_32_8 14770 15603 + 2.A.64.3.2
pfam HRGMv2_0305_32 HRGMv2_0305_32_9 15619 16710 + GFO_IDH_MocA | GFO_IDH_MocA_C | F420_oxidored | GFO_IDH_MocA_C3
CAZyme HRGMv2_0305_32 HRGMv2_0305_32_10 16785 18257 + GH109
Gene ID: HRGMv2_0305_32_4
Type: CAZyme
Location: 8413 - 10425 (+)
Gene ID: HRGMv2_0305_32_5
Type: CAZyme
Location: 10566 - 12389 (+)
Gene ID: HRGMv2_0305_32_6
Type: CAZyme
Location: 13242 - 14231 (-)
Gene ID: HRGMv2_0305_32_7
Type: pfam
Location: 14533 - 14751 (+)
Gene ID: HRGMv2_0305_32_8
Type: TC
Location: 14770 - 15603 (+)
Gene ID: HRGMv2_0305_32_9
Type: pfam
Location: 15619 - 16710 (+)
Gene ID: HRGMv2_0305_32_10
Type: CAZyme
Location: 16785 - 18257 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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