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Cluster: HRGMv2_0305_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0305_12 HRGMv2_0305_12_8 17214 19535 - GH3
NULL(UNKNOWN) HRGMv2_0305_12 HRGMv2_0305_12_9 19544 20800 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0305_12 HRGMv2_0305_12_10 20827 22503 - 8.A.46.2.2
TC HRGMv2_0305_12 HRGMv2_0305_12_11 22518 25706 - 1.B.14.6.2
CAZyme HRGMv2_0305_12 HRGMv2_0305_12_12 25718 26554 - GH16_3
TF HRGMv2_0305_12 HRGMv2_0305_12_13 26793 30770 - HTH_AraC
TC HRGMv2_0305_12 HRGMv2_0305_12_14 31474 31851 + 1.A.43.1.13
pfam HRGMv2_0305_12 HRGMv2_0305_12_15 32398 33453 + PorP_SprF
TC HRGMv2_0305_12 HRGMv2_0305_12_16 33459 34907 + 9.A.25.1.1
pfam HRGMv2_0305_12 HRGMv2_0305_12_17 34914 35741 + GldL_N
TC HRGMv2_0305_12 HRGMv2_0305_12_18 35805 37349 + 9.A.25.1.1
Gene ID: HRGMv2_0305_12_8
Type: CAZyme
Location: 17214 - 19535 (-)
Gene ID: HRGMv2_0305_12_9
Type:
Location: 19544 - 20800 (-)
Gene ID: HRGMv2_0305_12_10
Type: TC
Location: 20827 - 22503 (-)
Gene ID: HRGMv2_0305_12_11
Type: TC
Location: 22518 - 25706 (-)
Gene ID: HRGMv2_0305_12_12
Type: CAZyme
Location: 25718 - 26554 (-)
Gene ID: HRGMv2_0305_12_13
Type: TF
Location: 26793 - 30770 (-)
Gene ID: HRGMv2_0305_12_14
Type: TC
Location: 31474 - 31851 (+)
Gene ID: HRGMv2_0305_12_15
Type: pfam
Location: 32398 - 33453 (+)
Gene ID: HRGMv2_0305_12_16
Type: TC
Location: 33459 - 34907 (+)
Gene ID: HRGMv2_0305_12_17
Type: pfam
Location: 34914 - 35741 (+)
Gene ID: HRGMv2_0305_12_18
Type: TC
Location: 35805 - 37349 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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