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Cluster: HRGMv2_0301_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0301_6 HRGMv2_0301_6_77 96402 99836 + 1.B.14.6.1
pfam HRGMv2_0301_6 HRGMv2_0301_6_78 99848 101608 + SusD_RagB | SusD-like_3
TC HRGMv2_0301_6 HRGMv2_0301_6_79 101643 104453 + 1.B.14.6.1
pfam HRGMv2_0301_6 HRGMv2_0301_6_80 104483 106171 + SusD_RagB | SusD-like_3
pfam HRGMv2_0301_6 HRGMv2_0301_6_81 106393 108384 + SusF_SusE | SusF_SusE
CAZyme HRGMv2_0301_6 HRGMv2_0301_6_82 108528 110501 + CBM72 | GH16
CAZyme HRGMv2_0301_6 HRGMv2_0301_6_83 110759 113266 + GH2
CAZyme HRGMv2_0301_6 HRGMv2_0301_6_84 113285 115549 + GH3
Gene ID: HRGMv2_0301_6_77
Type: TC
Location: 96402 - 99836 (+)
Gene ID: HRGMv2_0301_6_78
Type: pfam
Location: 99848 - 101608 (+)
Gene ID: HRGMv2_0301_6_79
Type: TC
Location: 101643 - 104453 (+)
Gene ID: HRGMv2_0301_6_80
Type: pfam
Location: 104483 - 106171 (+)
Gene ID: HRGMv2_0301_6_81
Type: pfam
Location: 106393 - 108384 (+)
Gene ID: HRGMv2_0301_6_82
Type: CAZyme
Location: 108528 - 110501 (+)
Gene ID: HRGMv2_0301_6_83
Type: CAZyme
Location: 110759 - 113266 (+)
Gene ID: HRGMv2_0301_6_84
Type: CAZyme
Location: 113285 - 115549 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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