Cluster: HRGMv2_0300_CGC32
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0300
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0300_7 | HRGMv2_0300_7_38 | 48168 | 50177 | - | 8.A.46.1.3 |
| TC | HRGMv2_0300_7 | HRGMv2_0300_7_39 | 50194 | 53478 | - | 1.B.14.6.2 |
| CAZyme | HRGMv2_0300_7 | HRGMv2_0300_7_40 | 54400 | 57588 | - | GH2 |
| TC | HRGMv2_0300_7 | HRGMv2_0300_7_41 | 58022 | 61267 | + | 1.B.14.6.1 |
| TC | HRGMv2_0300_7 | HRGMv2_0300_7_42 | 61293 | 63218 | + | 8.A.46.1.2 |
| pfam | HRGMv2_0300_7 | HRGMv2_0300_7_43 | 63231 | 64895 | + | fn3 | DUF5123 |
| CAZyme | HRGMv2_0300_7 | HRGMv2_0300_7_44 | 65044 | 67014 | - | CE19 |
| CAZyme | HRGMv2_0300_7 | HRGMv2_0300_7_45 | 67016 | 69358 | - | GH31_9 |
| pfam | HRGMv2_0300_7 | HRGMv2_0300_7_46 | 69489 | 71306 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0300_7 | HRGMv2_0300_7_47 | 71331 | 74564 | - | 1.B.14.6.1 |
| TF | HRGMv2_0300_7 | HRGMv2_0300_7_48 | 74737 | 77079 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_0300_7 | HRGMv2_0300_7_49 | 77868 | 80123 | + | GH3 |
Gene ID: HRGMv2_0300_7_38
Type: TC
Location: 48168 - 50177 (-)
Type: TC
Location: 48168 - 50177 (-)
Gene ID: HRGMv2_0300_7_39
Type: TC
Location: 50194 - 53478 (-)
Type: TC
Location: 50194 - 53478 (-)
Gene ID: HRGMv2_0300_7_40
Type: CAZyme
Location: 54400 - 57588 (-)
Type: CAZyme
Location: 54400 - 57588 (-)
Gene ID: HRGMv2_0300_7_41
Type: TC
Location: 58022 - 61267 (+)
Type: TC
Location: 58022 - 61267 (+)
Gene ID: HRGMv2_0300_7_42
Type: TC
Location: 61293 - 63218 (+)
Type: TC
Location: 61293 - 63218 (+)
Gene ID: HRGMv2_0300_7_43
Type: pfam
Location: 63231 - 64895 (+)
Type: pfam
Location: 63231 - 64895 (+)
Gene ID: HRGMv2_0300_7_44
Type: CAZyme
Location: 65044 - 67014 (-)
Type: CAZyme
Location: 65044 - 67014 (-)
Gene ID: HRGMv2_0300_7_45
Type: CAZyme
Location: 67016 - 69358 (-)
Type: CAZyme
Location: 67016 - 69358 (-)
Gene ID: HRGMv2_0300_7_46
Type: pfam
Location: 69489 - 71306 (-)
Type: pfam
Location: 69489 - 71306 (-)
Gene ID: HRGMv2_0300_7_47
Type: TC
Location: 71331 - 74564 (-)
Type: TC
Location: 71331 - 74564 (-)
Gene ID: HRGMv2_0300_7_48
Type: TF
Location: 74737 - 77079 (-)
Type: TF
Location: 74737 - 77079 (-)
Gene ID: HRGMv2_0300_7_49
Type: CAZyme
Location: 77868 - 80123 (+)
Type: CAZyme
Location: 77868 - 80123 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella buccae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.