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Cluster: HRGMv2_0300_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0300_1 HRGMv2_0300_1_54 58486 59361 + 2.A.7.3.36
pfam HRGMv2_0300_1 HRGMv2_0300_1_55 59373 59864 + RNase_T | Rv2179c-like
pfam HRGMv2_0300_1 HRGMv2_0300_1_56 59980 61092 - DUF6057
CAZyme HRGMv2_0300_1 HRGMv2_0300_1_57 61261 63297 - GH13_8
pfam HRGMv2_0300_1 HRGMv2_0300_1_58 63294 63737 - DUF386
pfam HRGMv2_0300_1 HRGMv2_0300_1_59 63996 65114 - MORN | MORN | MORN | MORN | MORN | MORN | MORN | MORN | MORN | MORN | MORN | MORN | MORN
TC HRGMv2_0300_1 HRGMv2_0300_1_60 65283 66578 - 2.A.40.7.6
pfam HRGMv2_0300_1 HRGMv2_0300_1_61 66819 67559 - DUF5020
TC HRGMv2_0300_1 HRGMv2_0300_1_62 67804 69108 - 2.A.40.4.2
TC HRGMv2_0300_1 HRGMv2_0300_1_63 69229 70428 + 2.A.40.1.4
Gene ID: HRGMv2_0300_1_54
Type: TC
Location: 58486 - 59361 (+)
Gene ID: HRGMv2_0300_1_55
Type: pfam
Location: 59373 - 59864 (+)
Gene ID: HRGMv2_0300_1_56
Type: pfam
Location: 59980 - 61092 (-)
Gene ID: HRGMv2_0300_1_57
Type: CAZyme
Location: 61261 - 63297 (-)
Gene ID: HRGMv2_0300_1_58
Type: pfam
Location: 63294 - 63737 (-)
Gene ID: HRGMv2_0300_1_59
Type: pfam
Location: 63996 - 65114 (-)
Gene ID: HRGMv2_0300_1_60
Type: TC
Location: 65283 - 66578 (-)
Gene ID: HRGMv2_0300_1_61
Type: pfam
Location: 66819 - 67559 (-)
Gene ID: HRGMv2_0300_1_62
Type: TC
Location: 67804 - 69108 (-)
Gene ID: HRGMv2_0300_1_63
Type: TC
Location: 69229 - 70428 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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