Cluster: HRGMv2_0299_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_0299
- CGC Family ID: CGCFAM_00001
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0299_22 | HRGMv2_0299_22_1 | 414 | 3683 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0299_22 | HRGMv2_0299_22_2 | 3704 | 5764 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | HRGMv2_0299_22 | HRGMv2_0299_22_3 | 5813 | 6619 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0299_22 | HRGMv2_0299_22_4 | 6680 | 8392 | + | GH16_3 |
| CAZyme | HRGMv2_0299_22 | HRGMv2_0299_22_5 | 8680 | 9798 | + | GH43_24 |
Gene ID: HRGMv2_0299_22_1
Type: TC
Location: 414 - 3683 (+)
Type: TC
Location: 414 - 3683 (+)
Gene ID: HRGMv2_0299_22_2
Type: pfam
Location: 3704 - 5764 (+)
Type: pfam
Location: 3704 - 5764 (+)
Gene ID: HRGMv2_0299_22_3
Type:
Location: 5813 - 6619 (+)
Type:
Location: 5813 - 6619 (+)
Gene ID: HRGMv2_0299_22_4
Type: CAZyme
Location: 6680 - 8392 (+)
Type: CAZyme
Location: 6680 - 8392 (+)
Gene ID: HRGMv2_0299_22_5
Type: CAZyme
Location: 8680 - 9798 (+)
Type: CAZyme
Location: 8680 - 9798 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900553155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0299_22_5 | vegetarian > omnivore | 1.80673 | 0.04277 |