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Cluster: HRGMv2_0299_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0299_143 HRGMv2_0299_143_6 6667 7935 + 2.A.1.10.1
pfam HRGMv2_0299_143 HRGMv2_0299_143_7 7951 8676 + Methyltrans_RNA | PUA_4
TC HRGMv2_0299_143 HRGMv2_0299_143_8 8777 10474 - 2.A.81.1.2
NULL(UNKNOWN) HRGMv2_0299_143 HRGMv2_0299_143_9 10478 10624 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0299_143 HRGMv2_0299_143_10 10642 12123 - tRNA-synt_2b | HGTP_anticodon | ProRS-C_1
TC HRGMv2_0299_143 HRGMv2_0299_143_11 12329 13003 + 9.B.186.1.3
CAZyme HRGMv2_0299_143 HRGMv2_0299_143_12 13181 13921 + GT51
pfam HRGMv2_0299_143 HRGMv2_0299_143_13 14003 16360 + UvrD-helicase | AAA_19 | UvrD_C | UvrD_C_2 | PcrA_UvrD_tudor
CAZyme HRGMv2_0299_143 HRGMv2_0299_143_14 16357 17286 - GH73
pfam HRGMv2_0299_143 HRGMv2_0299_143_15 17431 18318 + Acyl_transf_1
CAZyme HRGMv2_0299_143 HRGMv2_0299_143_16 18327 20462 + GH13_38
Gene ID: HRGMv2_0299_143_6
Type: TC
Location: 6667 - 7935 (+)
Gene ID: HRGMv2_0299_143_7
Type: pfam
Location: 7951 - 8676 (+)
Gene ID: HRGMv2_0299_143_8
Type: TC
Location: 8777 - 10474 (-)
Gene ID: HRGMv2_0299_143_9
Type:
Location: 10478 - 10624 (-)
Gene ID: HRGMv2_0299_143_10
Type: pfam
Location: 10642 - 12123 (-)
Gene ID: HRGMv2_0299_143_11
Type: TC
Location: 12329 - 13003 (+)
Gene ID: HRGMv2_0299_143_12
Type: CAZyme
Location: 13181 - 13921 (+)
Gene ID: HRGMv2_0299_143_13
Type: pfam
Location: 14003 - 16360 (+)
Gene ID: HRGMv2_0299_143_14
Type: CAZyme
Location: 16357 - 17286 (-)
Gene ID: HRGMv2_0299_143_15
Type: pfam
Location: 17431 - 18318 (+)
Gene ID: HRGMv2_0299_143_16
Type: CAZyme
Location: 18327 - 20462 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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