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Cluster: HRGMv2_0299_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0299_75 HRGMv2_0299_75_3 2907 5951 + 1.B.14.6.1
pfam HRGMv2_0299_75 HRGMv2_0299_75_4 5977 7596 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0299_75 HRGMv2_0299_75_5 7670 8737 + GH43_3
pfam HRGMv2_0299_75 HRGMv2_0299_75_6 8867 10783 + FG-GAP_3
NULL(UNKNOWN) HRGMv2_0299_75 HRGMv2_0299_75_7 10803 11396 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0299_75 HRGMv2_0299_75_8 11412 13433 + GH93
CAZyme HRGMv2_0299_75 HRGMv2_0299_75_9 13481 15313 + GH2
CAZyme HRGMv2_0299_75 HRGMv2_0299_75_10 15334 17337 + GH182
TF HRGMv2_0299_75 HRGMv2_0299_75_11 17452 21387 + HTH_AraC
CAZyme HRGMv2_0299_75 HRGMv2_0299_75_12 21424 23523 + GH43_3
Gene ID: HRGMv2_0299_75_3
Type: TC
Location: 2907 - 5951 (+)
Gene ID: HRGMv2_0299_75_4
Type: pfam
Location: 5977 - 7596 (+)
Gene ID: HRGMv2_0299_75_5
Type: CAZyme
Location: 7670 - 8737 (+)
Gene ID: HRGMv2_0299_75_6
Type: pfam
Location: 8867 - 10783 (+)
Gene ID: HRGMv2_0299_75_7
Type:
Location: 10803 - 11396 (+)
Gene ID: HRGMv2_0299_75_8
Type: CAZyme
Location: 11412 - 13433 (+)
Gene ID: HRGMv2_0299_75_9
Type: CAZyme
Location: 13481 - 15313 (+)
Gene ID: HRGMv2_0299_75_10
Type: CAZyme
Location: 15334 - 17337 (+)
Gene ID: HRGMv2_0299_75_11
Type: TF
Location: 17452 - 21387 (+)
Gene ID: HRGMv2_0299_75_12
Type: CAZyme
Location: 21424 - 23523 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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