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Cluster: HRGMv2_0299_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0299_56 HRGMv2_0299_56_2 314 3505 + 1.B.14.6.1
TC HRGMv2_0299_56 HRGMv2_0299_56_3 3568 5322 + 8.A.46.1.3
pfam HRGMv2_0299_56 HRGMv2_0299_56_4 5400 6455 + DUF5017
CAZyme HRGMv2_0299_56 HRGMv2_0299_56_5 6667 9708 + PL8_2
CAZyme HRGMv2_0299_56 HRGMv2_0299_56_6 9782 11053 + GH88
CAZyme HRGMv2_0299_56 HRGMv2_0299_56_7 11126 12931 + PL29
CAZyme HRGMv2_0299_56 HRGMv2_0299_56_8 12941 14755 + PL29
TC HRGMv2_0299_56 HRGMv2_0299_56_9 14852 16603 - 3.A.18.1.1
TC HRGMv2_0299_56 HRGMv2_0299_56_10 16647 17885 - 1.B.42.1.13
Gene ID: HRGMv2_0299_56_2
Type: TC
Location: 314 - 3505 (+)
Gene ID: HRGMv2_0299_56_3
Type: TC
Location: 3568 - 5322 (+)
Gene ID: HRGMv2_0299_56_4
Type: pfam
Location: 5400 - 6455 (+)
Gene ID: HRGMv2_0299_56_5
Type: CAZyme
Location: 6667 - 9708 (+)
Gene ID: HRGMv2_0299_56_6
Type: CAZyme
Location: 9782 - 11053 (+)
Gene ID: HRGMv2_0299_56_7
Type: CAZyme
Location: 11126 - 12931 (+)
Gene ID: HRGMv2_0299_56_8
Type: CAZyme
Location: 12941 - 14755 (+)
Gene ID: HRGMv2_0299_56_9
Type: TC
Location: 14852 - 16603 (-)
Gene ID: HRGMv2_0299_56_10
Type: TC
Location: 16647 - 17885 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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