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Cluster: HRGMv2_0299_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0299_55 HRGMv2_0299_55_20 21047 24067 + 1.B.14.6.1
pfam HRGMv2_0299_55 HRGMv2_0299_55_21 24108 25775 + SusD_RagB | SusD-like_3
pfam HRGMv2_0299_55 HRGMv2_0299_55_22 25790 26986 + DUF4960
CAZyme HRGMv2_0299_55 HRGMv2_0299_55_23 27094 29559 + GH32
TC HRGMv2_0299_55 HRGMv2_0299_55_24 30022 30786 - 3.A.1.27.4
TC HRGMv2_0299_55 HRGMv2_0299_55_25 30797 31543 - 3.A.1.27.2
TC HRGMv2_0299_55 HRGMv2_0299_55_26 31679 32548 + 1.B.42.1.2
Gene ID: HRGMv2_0299_55_20
Type: TC
Location: 21047 - 24067 (+)
Gene ID: HRGMv2_0299_55_21
Type: pfam
Location: 24108 - 25775 (+)
Gene ID: HRGMv2_0299_55_22
Type: pfam
Location: 25790 - 26986 (+)
Gene ID: HRGMv2_0299_55_23
Type: CAZyme
Location: 27094 - 29559 (+)
Gene ID: HRGMv2_0299_55_24
Type: TC
Location: 30022 - 30786 (-)
Gene ID: HRGMv2_0299_55_25
Type: TC
Location: 30797 - 31543 (-)
Gene ID: HRGMv2_0299_55_26
Type: TC
Location: 31679 - 32548 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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