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Cluster: HRGMv2_0297_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0297_1 HRGMv2_0297_1_167 193370 196252 + GH2
TC HRGMv2_0297_1 HRGMv2_0297_1_168 196345 197733 + 3.A.1.11.8
TC HRGMv2_0297_1 HRGMv2_0297_1_169 197744 198544 + 3.A.1.11.8
TC HRGMv2_0297_1 HRGMv2_0297_1_170 198538 199329 + 3.A.1.11.8
STP HRGMv2_0297_1 HRGMv2_0297_1_171 199415 200692 + SBP_bac_1
NULL(UNKNOWN) HRGMv2_0297_1 HRGMv2_0297_1_172 200804 201751 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0297_1 HRGMv2_0297_1_173 201790 203721 + GT51
pfam HRGMv2_0297_1 HRGMv2_0297_1_174 203733 204215 - Acetyltransf_1 | FR47 | Acetyltransf_3 | Acetyltransf_4 | Acetyltransf_7 | Acetyltransf_10
CAZyme HRGMv2_0297_1 HRGMv2_0297_1_175 204510 207083 - GH3
pfam HRGMv2_0297_1 HRGMv2_0297_1_176 207594 209075 - SusD_RagB | SusD-like_3
TC HRGMv2_0297_1 HRGMv2_0297_1_177 209111 212119 - 1.B.14.6.1
pfam HRGMv2_0297_1 HRGMv2_0297_1_178 212246 215017 - UvrA_DNA-bind | UvrA_inter
pfam HRGMv2_0297_1 HRGMv2_0297_1_179 215241 216743 + GHL10
TC HRGMv2_0297_1 HRGMv2_0297_1_180 216976 217584 + 1.B.44.2.11
Gene ID: HRGMv2_0297_1_167
Type: CAZyme
Location: 193370 - 196252 (+)
Gene ID: HRGMv2_0297_1_168
Type: TC
Location: 196345 - 197733 (+)
Gene ID: HRGMv2_0297_1_169
Type: TC
Location: 197744 - 198544 (+)
Gene ID: HRGMv2_0297_1_170
Type: TC
Location: 198538 - 199329 (+)
Gene ID: HRGMv2_0297_1_171
Type: STP
Location: 199415 - 200692 (+)
Gene ID: HRGMv2_0297_1_172
Type:
Location: 200804 - 201751 (+)
Gene ID: HRGMv2_0297_1_173
Type: CAZyme
Location: 201790 - 203721 (+)
Gene ID: HRGMv2_0297_1_174
Type: pfam
Location: 203733 - 204215 (-)
Gene ID: HRGMv2_0297_1_175
Type: CAZyme
Location: 204510 - 207083 (-)
Gene ID: HRGMv2_0297_1_176
Type: pfam
Location: 207594 - 209075 (-)
Gene ID: HRGMv2_0297_1_177
Type: TC
Location: 209111 - 212119 (-)
Gene ID: HRGMv2_0297_1_178
Type: pfam
Location: 212246 - 215017 (-)
Gene ID: HRGMv2_0297_1_179
Type: pfam
Location: 215241 - 216743 (+)
Gene ID: HRGMv2_0297_1_180
Type: TC
Location: 216976 - 217584 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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