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Cluster: HRGMv2_0297_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0297_1 HRGMv2_0297_1_153 175764 176732 + 1.A.34.1.3
TF HRGMv2_0297_1 HRGMv2_0297_1_154 176758 177105 + MerR
STP HRGMv2_0297_1 HRGMv2_0297_1_155 177361 179634 - HD
CAZyme HRGMv2_0297_1 HRGMv2_0297_1_156 179814 181073 - GH23
pfam HRGMv2_0297_1 HRGMv2_0297_1_157 181077 181871 - DUF5683
pfam HRGMv2_0297_1 HRGMv2_0297_1_158 181884 182783 - ParBc | HTH_ParB | ParB_dimer
TC HRGMv2_0297_1 HRGMv2_0297_1_159 182805 183575 - 8.A.3.2.3
pfam HRGMv2_0297_1 HRGMv2_0297_1_160 183786 184559 + SurE
CAZyme HRGMv2_0297_1 HRGMv2_0297_1_161 184556 185698 + GT19
pfam HRGMv2_0297_1 HRGMv2_0297_1_162 185930 186775 - CTP_transf_1
TC HRGMv2_0297_1 HRGMv2_0297_1_163 186884 188923 - 3.A.16.1.1
Gene ID: HRGMv2_0297_1_153
Type: TC
Location: 175764 - 176732 (+)
Gene ID: HRGMv2_0297_1_154
Type: TF
Location: 176758 - 177105 (+)
Gene ID: HRGMv2_0297_1_155
Type: STP
Location: 177361 - 179634 (-)
Gene ID: HRGMv2_0297_1_156
Type: CAZyme
Location: 179814 - 181073 (-)
Gene ID: HRGMv2_0297_1_157
Type: pfam
Location: 181077 - 181871 (-)
Gene ID: HRGMv2_0297_1_158
Type: pfam
Location: 181884 - 182783 (-)
Gene ID: HRGMv2_0297_1_159
Type: TC
Location: 182805 - 183575 (-)
Gene ID: HRGMv2_0297_1_160
Type: pfam
Location: 183786 - 184559 (+)
Gene ID: HRGMv2_0297_1_161
Type: CAZyme
Location: 184556 - 185698 (+)
Gene ID: HRGMv2_0297_1_162
Type: pfam
Location: 185930 - 186775 (-)
Gene ID: HRGMv2_0297_1_163
Type: TC
Location: 186884 - 188923 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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