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Cluster: HRGMv2_0297_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0297_10 HRGMv2_0297_10_56 48685 49992 + 2.A.66.1.4
pfam HRGMv2_0297_10 HRGMv2_0297_10_57 49947 51044 - Sel1 | Sel1
pfam HRGMv2_0297_10 HRGMv2_0297_10_58 51041 52057 - AI-2E_transport
CAZyme HRGMv2_0297_10 HRGMv2_0297_10_59 52308 54632 - GH20
pfam HRGMv2_0297_10 HRGMv2_0297_10_60 54822 55739 - F5_F8_type_C | DUF4999 | F5_F8_type_C_2
pfam HRGMv2_0297_10 HRGMv2_0297_10_61 55804 57027 - BT_3987-like_N | Laminin_G_3
CAZyme HRGMv2_0297_10 HRGMv2_0297_10_62 57035 58171 - GH18
TC HRGMv2_0297_10 HRGMv2_0297_10_63 58191 59738 - 8.A.46.2.1
TC HRGMv2_0297_10 HRGMv2_0297_10_64 59758 62841 - 1.B.14.6.13
CAZyme HRGMv2_0297_10 HRGMv2_0297_10_65 63018 65075 - GH20
CAZyme HRGMv2_0297_10 HRGMv2_0297_10_66 65083 67422 - GH20
Gene ID: HRGMv2_0297_10_56
Type: TC
Location: 48685 - 49992 (+)
Gene ID: HRGMv2_0297_10_57
Type: pfam
Location: 49947 - 51044 (-)
Gene ID: HRGMv2_0297_10_58
Type: pfam
Location: 51041 - 52057 (-)
Gene ID: HRGMv2_0297_10_59
Type: CAZyme
Location: 52308 - 54632 (-)
Gene ID: HRGMv2_0297_10_60
Type: pfam
Location: 54822 - 55739 (-)
Gene ID: HRGMv2_0297_10_61
Type: pfam
Location: 55804 - 57027 (-)
Gene ID: HRGMv2_0297_10_62
Type: CAZyme
Location: 57035 - 58171 (-)
Gene ID: HRGMv2_0297_10_63
Type: TC
Location: 58191 - 59738 (-)
Gene ID: HRGMv2_0297_10_64
Type: TC
Location: 59758 - 62841 (-)
Gene ID: HRGMv2_0297_10_65
Type: CAZyme
Location: 63018 - 65075 (-)
Gene ID: HRGMv2_0297_10_66
Type: CAZyme
Location: 65083 - 67422 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0297_10_56 vegetarian > vegan 1.11497 0.03214

🧭 Explore Read Mapping of CGC

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