Cluster: HRGMv2_0297_CGC1
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0297
- CGC Family ID: CGCFAM_07544
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0297_1 | HRGMv2_0297_1_100 | 101841 | 104411 | - | GH84 |
| pfam | HRGMv2_0297_1 | HRGMv2_0297_1_101 | 104566 | 105969 | - | DUF5009 |
| pfam | HRGMv2_0297_1 | HRGMv2_0297_1_102 | 106128 | 107591 | - | Metallophos | MetallophosC | MetallophosN |
| TC | HRGMv2_0297_1 | HRGMv2_0297_1_103 | 107605 | 109020 | - | 2.A.1.1.55 |
| pfam | HRGMv2_0297_1 | HRGMv2_0297_1_104 | 109035 | 110138 | - | DUF4434 |
| pfam | HRGMv2_0297_1 | HRGMv2_0297_1_105 | 110160 | 111245 | - | HGSNAT_cat | DUF5009 |
| TC | HRGMv2_0297_1 | HRGMv2_0297_1_106 | 111324 | 112964 | - | 8.A.46.2.2 |
| TC | HRGMv2_0297_1 | HRGMv2_0297_1_107 | 112975 | 116118 | - | 1.B.14.6.13 |
| pfam | HRGMv2_0297_1 | HRGMv2_0297_1_108 | 116159 | 117325 | - | GlcNAc_2-epim |
| NULL(UNKNOWN) | HRGMv2_0297_1 | HRGMv2_0297_1_109 | 117375 | 117512 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0297_1 | HRGMv2_0297_1_110 | 117631 | 119973 | - | GH20 |
Gene ID: HRGMv2_0297_1_100
Type: CAZyme
Location: 101841 - 104411 (-)
Type: CAZyme
Location: 101841 - 104411 (-)
Gene ID: HRGMv2_0297_1_101
Type: pfam
Location: 104566 - 105969 (-)
Type: pfam
Location: 104566 - 105969 (-)
Gene ID: HRGMv2_0297_1_102
Type: pfam
Location: 106128 - 107591 (-)
Type: pfam
Location: 106128 - 107591 (-)
Gene ID: HRGMv2_0297_1_103
Type: TC
Location: 107605 - 109020 (-)
Type: TC
Location: 107605 - 109020 (-)
Gene ID: HRGMv2_0297_1_104
Type: pfam
Location: 109035 - 110138 (-)
Type: pfam
Location: 109035 - 110138 (-)
Gene ID: HRGMv2_0297_1_105
Type: pfam
Location: 110160 - 111245 (-)
Type: pfam
Location: 110160 - 111245 (-)
Gene ID: HRGMv2_0297_1_106
Type: TC
Location: 111324 - 112964 (-)
Type: TC
Location: 111324 - 112964 (-)
Gene ID: HRGMv2_0297_1_107
Type: TC
Location: 112975 - 116118 (-)
Type: TC
Location: 112975 - 116118 (-)
Gene ID: HRGMv2_0297_1_108
Type: pfam
Location: 116159 - 117325 (-)
Type: pfam
Location: 116159 - 117325 (-)
Gene ID: HRGMv2_0297_1_109
Type:
Location: 117375 - 117512 (+)
Type:
Location: 117375 - 117512 (+)
Gene ID: HRGMv2_0297_1_110
Type: CAZyme
Location: 117631 - 119973 (-)
Type: CAZyme
Location: 117631 - 119973 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000432735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0297_1_100 | vegetarian > vegan | 1.03023 | 0.03214 |
| HRGMv2_0297_1_102 | vegetarian > omnivore | 1.32611 | 0.02872 |
| HRGMv2_0297_1_103 | vegetarian > omnivore | 2.00471 | 0.02872 |
| HRGMv2_0297_1_105 | vegetarian > omnivore | 1.50488 | 0.02872 |
| HRGMv2_0297_1_106 | vegetarian > omnivore | 1.67885 | 0.02872 |
| HRGMv2_0297_1_107 | vegetarian > omnivore | 2.10969 | 0.02872 |
| HRGMv2_0297_1_107 | vegetarian > vegan | 1.57798 | 0.03214 |