Cluster: HRGMv2_0290_CGC4
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0290
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0290_10 | HRGMv2_0290_10_60 | 77842 | 79473 | - | 9.B.174.1.1 |
| NULL(UNKNOWN) | HRGMv2_0290_10 | HRGMv2_0290_10_61 | 79460 | 79606 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0290_10 | HRGMv2_0290_10_62 | 79621 | 80406 | + | GT2 |
| CAZyme | HRGMv2_0290_10 | HRGMv2_0290_10_63 | 80513 | 81706 | + | GH33 |
| TC | HRGMv2_0290_10 | HRGMv2_0290_10_64 | 81825 | 83177 | - | 2.A.22.5.3 |
| NULL(UNKNOWN) | HRGMv2_0290_10 | HRGMv2_0290_10_65 | 84007 | 84561 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0290_10 | HRGMv2_0290_10_66 | 84392 | 85861 | - | Radical_SAM | BATS |
| TC | HRGMv2_0290_10 | HRGMv2_0290_10_67 | 86164 | 86859 | + | 1.A.30.2.9 |
| pfam | HRGMv2_0290_10 | HRGMv2_0290_10_68 | 86864 | 87256 | + | ExbD |
| NULL(UNKNOWN) | HRGMv2_0290_10 | HRGMv2_0290_10_69 | 87438 | 87566 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0290_10 | HRGMv2_0290_10_70 | 88926 | 89918 | + | 3.A.1.13.2 |
| TC | HRGMv2_0290_10 | HRGMv2_0290_10_71 | 89918 | 90934 | + | 3.A.1.13.2 |
Gene ID: HRGMv2_0290_10_60
Type: TC
Location: 77842 - 79473 (-)
Type: TC
Location: 77842 - 79473 (-)
Gene ID: HRGMv2_0290_10_61
Type:
Location: 79460 - 79606 (-)
Type:
Location: 79460 - 79606 (-)
Gene ID: HRGMv2_0290_10_62
Type: CAZyme
Location: 79621 - 80406 (+)
Type: CAZyme
Location: 79621 - 80406 (+)
Gene ID: HRGMv2_0290_10_63
Type: CAZyme
Location: 80513 - 81706 (+)
Type: CAZyme
Location: 80513 - 81706 (+)
Gene ID: HRGMv2_0290_10_64
Type: TC
Location: 81825 - 83177 (-)
Type: TC
Location: 81825 - 83177 (-)
Gene ID: HRGMv2_0290_10_65
Type:
Location: 84007 - 84561 (+)
Type:
Location: 84007 - 84561 (+)
Gene ID: HRGMv2_0290_10_66
Type: pfam
Location: 84392 - 85861 (-)
Type: pfam
Location: 84392 - 85861 (-)
Gene ID: HRGMv2_0290_10_67
Type: TC
Location: 86164 - 86859 (+)
Type: TC
Location: 86164 - 86859 (+)
Gene ID: HRGMv2_0290_10_68
Type: pfam
Location: 86864 - 87256 (+)
Type: pfam
Location: 86864 - 87256 (+)
Gene ID: HRGMv2_0290_10_69
Type:
Location: 87438 - 87566 (+)
Type:
Location: 87438 - 87566 (+)
Gene ID: HRGMv2_0290_10_70
Type: TC
Location: 88926 - 89918 (+)
Type: TC
Location: 88926 - 89918 (+)
Gene ID: HRGMv2_0290_10_71
Type: TC
Location: 89918 - 90934 (+)
Type: TC
Location: 89918 - 90934 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Rikenella
Species
Rikenella microfusus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.