Cluster: HRGMv2_0290_CGC37
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0290
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0290_56 | HRGMv2_0290_56_99 | 111192 | 114212 | + | GH2 |
| CAZyme | HRGMv2_0290_56 | HRGMv2_0290_56_100 | 114279 | 115673 | + | GH29 |
| pfam | HRGMv2_0290_56 | HRGMv2_0290_56_101 | 116353 | 116706 | - | DUF1622 |
| pfam | HRGMv2_0290_56 | HRGMv2_0290_56_102 | 116791 | 117201 | + | UPF0047 |
| CAZyme | HRGMv2_0290_56 | HRGMv2_0290_56_103 | 117191 | 118321 | - | GT4 |
| pfam | HRGMv2_0290_56 | HRGMv2_0290_56_104 | 118387 | 118848 | + | Acetyltransf_1 | FR47 | Acetyltransf_7 | Acetyltransf_10 |
| TC | HRGMv2_0290_56 | HRGMv2_0290_56_105 | 118880 | 119476 | + | 2.A.107.1.2 |
| pfam | HRGMv2_0290_56 | HRGMv2_0290_56_106 | 119502 | 120539 | + | Exo_endo_phos |
| pfam | HRGMv2_0290_56 | HRGMv2_0290_56_107 | 120983 | 121960 | + | Metallophos | Metallophos_2 |
| CAZyme | HRGMv2_0290_56 | HRGMv2_0290_56_108 | 122045 | 124852 | + | GH2 |
| CAZyme | HRGMv2_0290_56 | HRGMv2_0290_56_109 | 124938 | 127745 | + | CBM51 |
| STP | HRGMv2_0290_56 | HRGMv2_0290_56_110 | 128550 | 128762 | - | HMA |
| TC | HRGMv2_0290_56 | HRGMv2_0290_56_111 | 128783 | 130996 | - | 3.A.3.5.30 |
Gene ID: HRGMv2_0290_56_99
Type: CAZyme
Location: 111192 - 114212 (+)
Type: CAZyme
Location: 111192 - 114212 (+)
Gene ID: HRGMv2_0290_56_100
Type: CAZyme
Location: 114279 - 115673 (+)
Type: CAZyme
Location: 114279 - 115673 (+)
Gene ID: HRGMv2_0290_56_101
Type: pfam
Location: 116353 - 116706 (-)
Type: pfam
Location: 116353 - 116706 (-)
Gene ID: HRGMv2_0290_56_102
Type: pfam
Location: 116791 - 117201 (+)
Type: pfam
Location: 116791 - 117201 (+)
Gene ID: HRGMv2_0290_56_103
Type: CAZyme
Location: 117191 - 118321 (-)
Type: CAZyme
Location: 117191 - 118321 (-)
Gene ID: HRGMv2_0290_56_104
Type: pfam
Location: 118387 - 118848 (+)
Type: pfam
Location: 118387 - 118848 (+)
Gene ID: HRGMv2_0290_56_105
Type: TC
Location: 118880 - 119476 (+)
Type: TC
Location: 118880 - 119476 (+)
Gene ID: HRGMv2_0290_56_106
Type: pfam
Location: 119502 - 120539 (+)
Type: pfam
Location: 119502 - 120539 (+)
Gene ID: HRGMv2_0290_56_107
Type: pfam
Location: 120983 - 121960 (+)
Type: pfam
Location: 120983 - 121960 (+)
Gene ID: HRGMv2_0290_56_108
Type: CAZyme
Location: 122045 - 124852 (+)
Type: CAZyme
Location: 122045 - 124852 (+)
Gene ID: HRGMv2_0290_56_109
Type: CAZyme
Location: 124938 - 127745 (+)
Type: CAZyme
Location: 124938 - 127745 (+)
Gene ID: HRGMv2_0290_56_110
Type: STP
Location: 128550 - 128762 (-)
Type: STP
Location: 128550 - 128762 (-)
Gene ID: HRGMv2_0290_56_111
Type: TC
Location: 128783 - 130996 (-)
Type: TC
Location: 128783 - 130996 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Rikenella
Species
Rikenella microfusus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.