Cluster: HRGMv2_0290_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0290
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0290_31 | HRGMv2_0290_31_3 | 3654 | 5804 | - | GH95 |
| pfam | HRGMv2_0290_31 | HRGMv2_0290_31_4 | 6805 | 9300 | - | TonB_dep_Rec_b-barrel | CarboxypepD_reg | CarbopepD_reg_2 | OMP_b-brl_3 |
| pfam | HRGMv2_0290_31 | HRGMv2_0290_31_5 | 9596 | 12760 | + | UvrD-helicase | UvrD-helicase | PDDEXK_1 | UvrD_C |
| TC | HRGMv2_0290_31 | HRGMv2_0290_31_6 | 13222 | 14166 | - | 1.A.34.1.2 |
| TC | HRGMv2_0290_31 | HRGMv2_0290_31_7 | 14159 | 15133 | - | 1.A.34.1.3 |
Gene ID: HRGMv2_0290_31_3
Type: CAZyme
Location: 3654 - 5804 (-)
Type: CAZyme
Location: 3654 - 5804 (-)
Gene ID: HRGMv2_0290_31_4
Type: pfam
Location: 6805 - 9300 (-)
Type: pfam
Location: 6805 - 9300 (-)
Gene ID: HRGMv2_0290_31_5
Type: pfam
Location: 9596 - 12760 (+)
Type: pfam
Location: 9596 - 12760 (+)
Gene ID: HRGMv2_0290_31_6
Type: TC
Location: 13222 - 14166 (-)
Type: TC
Location: 13222 - 14166 (-)
Gene ID: HRGMv2_0290_31_7
Type: TC
Location: 14159 - 15133 (-)
Type: TC
Location: 14159 - 15133 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Rikenella
Species
Rikenella microfusus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.