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Cluster: HRGMv2_0289_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0289_2 HRGMv2_0289_2_46 57983 58444 - 9.B.124.1.6
NULL(UNKNOWN) HRGMv2_0289_2 HRGMv2_0289_2_47 58528 58866 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_0289_2 HRGMv2_0289_2_48 58997 59167 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0289_2 HRGMv2_0289_2_49 59164 60333 - 3.B.1.1.3
pfam HRGMv2_0289_2 HRGMv2_0289_2_50 60357 60803 - Biotin_lipoyl
pfam HRGMv2_0289_2 HRGMv2_0289_2_51 60833 61417 - OAD_gamma
TC HRGMv2_0289_2 HRGMv2_0289_2_52 61480 63033 - 3.B.1.1.2
STP HRGMv2_0289_2 HRGMv2_0289_2_53 63154 63573 - Glyoxalase
CAZyme HRGMv2_0289_2 HRGMv2_0289_2_54 63861 65147 + GH53
Gene ID: HRGMv2_0289_2_46
Type: TC
Location: 57983 - 58444 (-)
Gene ID: HRGMv2_0289_2_47
Type:
Location: 58528 - 58866 (-)
Gene ID: HRGMv2_0289_2_48
Type:
Location: 58997 - 59167 (+)
Gene ID: HRGMv2_0289_2_49
Type: TC
Location: 59164 - 60333 (-)
Gene ID: HRGMv2_0289_2_50
Type: pfam
Location: 60357 - 60803 (-)
Gene ID: HRGMv2_0289_2_51
Type: pfam
Location: 60833 - 61417 (-)
Gene ID: HRGMv2_0289_2_52
Type: TC
Location: 61480 - 63033 (-)
Gene ID: HRGMv2_0289_2_53
Type: STP
Location: 63154 - 63573 (-)
Gene ID: HRGMv2_0289_2_54
Type: CAZyme
Location: 63861 - 65147 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0289_2_52 vegan > omnivore 1.09033 0.01882

🧭 Explore Read Mapping of CGC

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