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Cluster: HRGMv2_0289_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0289_12 HRGMv2_0289_12_11 12169 12984 - GT2
CAZyme HRGMv2_0289_12 HRGMv2_0289_12_12 12981 13892 - GT2
pfam HRGMv2_0289_12 HRGMv2_0289_12_13 14241 15389 - Glycos_transf_1 | Glyco_trans_1_4 | GT4-conflict
pfam HRGMv2_0289_12 HRGMv2_0289_12_14 15399 16463 - Acyl_transf_3
CAZyme HRGMv2_0289_12 HRGMv2_0289_12_15 16606 17589 - GT2
CAZyme HRGMv2_0289_12 HRGMv2_0289_12_16 17594 18586 - GT4
pfam HRGMv2_0289_12 HRGMv2_0289_12_17 18540 19493 - PS_pyruv_trans
TC HRGMv2_0289_12 HRGMv2_0289_12_18 19490 20902 - 2.A.66.2.6
NULL(UNKNOWN) HRGMv2_0289_12 HRGMv2_0289_12_19 20950 21618 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0289_12 HRGMv2_0289_12_20 21615 22787 - AAA_15 | AAA_21 | AAA_23
CAZyme HRGMv2_0289_12 HRGMv2_0289_12_21 22870 23784 + GT25
pfam HRGMv2_0289_12 HRGMv2_0289_12_22 23902 24951 - Acyl_transf_3
CAZyme HRGMv2_0289_12 HRGMv2_0289_12_23 25031 26185 - GT4
CAZyme HRGMv2_0289_12 HRGMv2_0289_12_24 26182 27231 - GT4
pfam HRGMv2_0289_12 HRGMv2_0289_12_25 27228 28487 - Wzy_C
CAZyme HRGMv2_0289_12 HRGMv2_0289_12_26 28484 29695 - GT4
pfam HRGMv2_0289_12 HRGMv2_0289_12_27 29677 30948 - Wzy_C
pfam HRGMv2_0289_12 HRGMv2_0289_12_28 30965 31975 - 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd
TC HRGMv2_0289_12 HRGMv2_0289_12_29 31991 34435 - 8.A.3.3.2
pfam HRGMv2_0289_12 HRGMv2_0289_12_30 34481 35290 - Poly_export | SLBB | SLBB_2
CAZyme HRGMv2_0289_12 HRGMv2_0289_12_31 35712 38090 - GH13_28
Gene ID: HRGMv2_0289_12_11
Type: CAZyme
Location: 12169 - 12984 (-)
Gene ID: HRGMv2_0289_12_12
Type: CAZyme
Location: 12981 - 13892 (-)
Gene ID: HRGMv2_0289_12_13
Type: pfam
Location: 14241 - 15389 (-)
Gene ID: HRGMv2_0289_12_14
Type: pfam
Location: 15399 - 16463 (-)
Gene ID: HRGMv2_0289_12_15
Type: CAZyme
Location: 16606 - 17589 (-)
Gene ID: HRGMv2_0289_12_16
Type: CAZyme
Location: 17594 - 18586 (-)
Gene ID: HRGMv2_0289_12_17
Type: pfam
Location: 18540 - 19493 (-)
Gene ID: HRGMv2_0289_12_18
Type: TC
Location: 19490 - 20902 (-)
Gene ID: HRGMv2_0289_12_19
Type:
Location: 20950 - 21618 (-)
Gene ID: HRGMv2_0289_12_20
Type: pfam
Location: 21615 - 22787 (-)
Gene ID: HRGMv2_0289_12_21
Type: CAZyme
Location: 22870 - 23784 (+)
Gene ID: HRGMv2_0289_12_22
Type: pfam
Location: 23902 - 24951 (-)
Gene ID: HRGMv2_0289_12_23
Type: CAZyme
Location: 25031 - 26185 (-)
Gene ID: HRGMv2_0289_12_24
Type: CAZyme
Location: 26182 - 27231 (-)
Gene ID: HRGMv2_0289_12_25
Type: pfam
Location: 27228 - 28487 (-)
Gene ID: HRGMv2_0289_12_26
Type: CAZyme
Location: 28484 - 29695 (-)
Gene ID: HRGMv2_0289_12_27
Type: pfam
Location: 29677 - 30948 (-)
Gene ID: HRGMv2_0289_12_28
Type: pfam
Location: 30965 - 31975 (-)
Gene ID: HRGMv2_0289_12_29
Type: TC
Location: 31991 - 34435 (-)
Gene ID: HRGMv2_0289_12_30
Type: pfam
Location: 34481 - 35290 (-)
Gene ID: HRGMv2_0289_12_31
Type: CAZyme
Location: 35712 - 38090 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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