Cluster: HRGMv2_0285_CGC5
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate: pectin/galactan
- Genome ID: HRGMv2_0285
- CGC Family ID: CGCFAM_00031
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0285_2 | HRGMv2_0285_2_137 | 174680 | 177598 | + | PL1 |
| CAZyme | HRGMv2_0285_2 | HRGMv2_0285_2_138 | 177776 | 179335 | + | PL1 |
| TC | HRGMv2_0285_2 | HRGMv2_0285_2_139 | 179731 | 182982 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0285_2 | HRGMv2_0285_2_140 | 183002 | 184864 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0285_2 | HRGMv2_0285_2_141 | 184900 | 186504 | + | fn3 | DUF4957 | DUF5123 |
| TC | HRGMv2_0285_2 | HRGMv2_0285_2_142 | 187527 | 190493 | + | 1.B.14.6.1 |
| TC | HRGMv2_0285_2 | HRGMv2_0285_2_143 | 190554 | 192233 | + | 8.A.46.1.1 |
| pfam | HRGMv2_0285_2 | HRGMv2_0285_2_144 | 192245 | 193420 | + | SusE | DUF5111 | DUF5114 |
| CAZyme | HRGMv2_0285_2 | HRGMv2_0285_2_145 | 193715 | 194779 | + | GH53 |
| CAZyme | HRGMv2_0285_2 | HRGMv2_0285_2_146 | 194822 | 197284 | + | GH2 |
Gene ID: HRGMv2_0285_2_137
Type: CAZyme
Location: 174680 - 177598 (+)
Type: CAZyme
Location: 174680 - 177598 (+)
Gene ID: HRGMv2_0285_2_138
Type: CAZyme
Location: 177776 - 179335 (+)
Type: CAZyme
Location: 177776 - 179335 (+)
Gene ID: HRGMv2_0285_2_139
Type: TC
Location: 179731 - 182982 (+)
Type: TC
Location: 179731 - 182982 (+)
Gene ID: HRGMv2_0285_2_140
Type: pfam
Location: 183002 - 184864 (+)
Type: pfam
Location: 183002 - 184864 (+)
Gene ID: HRGMv2_0285_2_141
Type: pfam
Location: 184900 - 186504 (+)
Type: pfam
Location: 184900 - 186504 (+)
Gene ID: HRGMv2_0285_2_142
Type: TC
Location: 187527 - 190493 (+)
Type: TC
Location: 187527 - 190493 (+)
Gene ID: HRGMv2_0285_2_143
Type: TC
Location: 190554 - 192233 (+)
Type: TC
Location: 190554 - 192233 (+)
Gene ID: HRGMv2_0285_2_144
Type: pfam
Location: 192245 - 193420 (+)
Type: pfam
Location: 192245 - 193420 (+)
Gene ID: HRGMv2_0285_2_145
Type: CAZyme
Location: 193715 - 194779 (+)
Type: CAZyme
Location: 193715 - 194779 (+)
Gene ID: HRGMv2_0285_2_146
Type: CAZyme
Location: 194822 - 197284 (+)
Type: CAZyme
Location: 194822 - 197284 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000436035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0285_2_138 | vegetarian > vegan | 3.54902 | 0.00409 |
| HRGMv2_0285_2_142 | vegan > omnivore | 1.64320 | 0.03201 |
| HRGMv2_0285_2_142 | vegetarian > omnivore | 1.67847 | 0.00863 |
| HRGMv2_0285_2_143 | vegetarian > omnivore | 2.40337 | 0.00863 |
| HRGMv2_0285_2_144 | vegetarian > omnivore | 1.93377 | 0.00863 |