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Cluster: HRGMv2_0285_CGC45

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0285_28 HRGMv2_0285_28_7 7589 8995 - GT19
pfam HRGMv2_0285_28 HRGMv2_0285_28_8 9010 9783 - SurE
TC HRGMv2_0285_28 HRGMv2_0285_28_9 9853 10659 + 8.A.3.2.3
pfam HRGMv2_0285_28 HRGMv2_0285_28_10 10724 11635 + ParBc | HTH_ParB | ParB_dimer
pfam HRGMv2_0285_28 HRGMv2_0285_28_11 11641 12345 + DUF5683
CAZyme HRGMv2_0285_28 HRGMv2_0285_28_12 12448 13806 + GH23
STP HRGMv2_0285_28 HRGMv2_0285_28_13 13874 16159 + ACT | HD
CAZyme HRGMv2_0285_28 HRGMv2_0285_28_14 16166 17155 + CE8
Gene ID: HRGMv2_0285_28_7
Type: CAZyme
Location: 7589 - 8995 (-)
Gene ID: HRGMv2_0285_28_8
Type: pfam
Location: 9010 - 9783 (-)
Gene ID: HRGMv2_0285_28_9
Type: TC
Location: 9853 - 10659 (+)
Gene ID: HRGMv2_0285_28_10
Type: pfam
Location: 10724 - 11635 (+)
Gene ID: HRGMv2_0285_28_11
Type: pfam
Location: 11641 - 12345 (+)
Gene ID: HRGMv2_0285_28_12
Type: CAZyme
Location: 12448 - 13806 (+)
Gene ID: HRGMv2_0285_28_13
Type: STP
Location: 13874 - 16159 (+)
Gene ID: HRGMv2_0285_28_14
Type: CAZyme
Location: 16166 - 17155 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0285_28_14 vegetarian > vegan 2.39976 0.00409

🧭 Explore Read Mapping of CGC

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