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Cluster: HRGMv2_0285_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0285_21 HRGMv2_0285_21_16 15739 16377 - 1.A.62.2.1
STP HRGMv2_0285_21 HRGMv2_0285_21_17 16400 17674 - AAA
pfam HRGMv2_0285_21 HRGMv2_0285_21_18 17744 18970 - OEP | OEP
TC HRGMv2_0285_21 HRGMv2_0285_21_19 19042 22260 - 2.A.6.1.13
TC HRGMv2_0285_21 HRGMv2_0285_21_20 22307 23491 - 2.A.6.1.8
NULL(UNKNOWN) HRGMv2_0285_21 HRGMv2_0285_21_21 23726 23962 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0285_21 HRGMv2_0285_21_22 24193 25845 + GH25
STP HRGMv2_0285_21 HRGMv2_0285_21_23 25977 26849 + Sigma70_r2 | Sigma70_r3 | Sigma70_r4
TC HRGMv2_0285_21 HRGMv2_0285_21_24 26999 27601 - 3.D.6.1.2
TC HRGMv2_0285_21 HRGMv2_0285_21_25 27615 28190 - 3.D.6.1.2
TC HRGMv2_0285_21 HRGMv2_0285_21_26 28206 28907 - 3.D.6.1.2
TC HRGMv2_0285_21 HRGMv2_0285_21_27 28885 29886 - 3.D.6.1.2
TC HRGMv2_0285_21 HRGMv2_0285_21_28 29950 31302 - 3.D.6.1.2
TC HRGMv2_0285_21 HRGMv2_0285_21_29 31299 32213 - 3.D.6.1.3
pfam HRGMv2_0285_21 HRGMv2_0285_21_30 32292 32705 - RseC_MucC
TC HRGMv2_0285_21 HRGMv2_0285_21_31 33027 34001 - 3.A.2.1.1
TC HRGMv2_0285_21 HRGMv2_0285_21_32 34008 35594 - 3.A.2.1.3
Gene ID: HRGMv2_0285_21_16
Type: TC
Location: 15739 - 16377 (-)
Gene ID: HRGMv2_0285_21_17
Type: STP
Location: 16400 - 17674 (-)
Gene ID: HRGMv2_0285_21_18
Type: pfam
Location: 17744 - 18970 (-)
Gene ID: HRGMv2_0285_21_19
Type: TC
Location: 19042 - 22260 (-)
Gene ID: HRGMv2_0285_21_20
Type: TC
Location: 22307 - 23491 (-)
Gene ID: HRGMv2_0285_21_21
Type:
Location: 23726 - 23962 (+)
Gene ID: HRGMv2_0285_21_22
Type: CAZyme
Location: 24193 - 25845 (+)
Gene ID: HRGMv2_0285_21_23
Type: STP
Location: 25977 - 26849 (+)
Gene ID: HRGMv2_0285_21_24
Type: TC
Location: 26999 - 27601 (-)
Gene ID: HRGMv2_0285_21_25
Type: TC
Location: 27615 - 28190 (-)
Gene ID: HRGMv2_0285_21_26
Type: TC
Location: 28206 - 28907 (-)
Gene ID: HRGMv2_0285_21_27
Type: TC
Location: 28885 - 29886 (-)
Gene ID: HRGMv2_0285_21_28
Type: TC
Location: 29950 - 31302 (-)
Gene ID: HRGMv2_0285_21_29
Type: TC
Location: 31299 - 32213 (-)
Gene ID: HRGMv2_0285_21_30
Type: pfam
Location: 32292 - 32705 (-)
Gene ID: HRGMv2_0285_21_31
Type: TC
Location: 33027 - 34001 (-)
Gene ID: HRGMv2_0285_21_32
Type: TC
Location: 34008 - 35594 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0285_21_28 vegetarian > vegan 1.13208 0.00409

🧭 Explore Read Mapping of CGC

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