Cluster: HRGMv2_0285_CGC3
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 6
- Substrate: beta-mannan/xylan/beta-glucan
- Genome ID: HRGMv2_0285
- CGC Family ID: CGCFAM_00044
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0285_2 | HRGMv2_0285_2_77 | 94372 | 96774 | - | GH10 |
| pfam | HRGMv2_0285_2 | HRGMv2_0285_2_78 | 96822 | 98243 | - | SGBP_B_XBD |
| pfam | HRGMv2_0285_2 | HRGMv2_0285_2_79 | 98321 | 100063 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0285_2 | HRGMv2_0285_2_80 | 100085 | 103240 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | HRGMv2_0285_2 | HRGMv2_0285_2_81 | 103281 | 103409 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0285_2 | HRGMv2_0285_2_82 | 103470 | 105425 | - | GH67 |
| TF | HRGMv2_0285_2 | HRGMv2_0285_2_83 | 105518 | 109408 | - | HTH_AraC |
| pfam | HRGMv2_0285_2 | HRGMv2_0285_2_84 | 109695 | 110903 | + | Lipase_GDSL | Lipase_GDSL_2 |
| TC | HRGMv2_0285_2 | HRGMv2_0285_2_85 | 110913 | 112346 | + | 2.A.2.3.2 |
| CAZyme | HRGMv2_0285_2 | HRGMv2_0285_2_86 | 112414 | 113538 | + | GH10 |
| CAZyme | HRGMv2_0285_2 | HRGMv2_0285_2_87 | 113585 | 114541 | + | GH43_1 |
| pfam | HRGMv2_0285_2 | HRGMv2_0285_2_88 | 114752 | 117190 | + | CBM_4_9 | Big_2 |
| NULL(UNKNOWN) | HRGMv2_0285_2 | HRGMv2_0285_2_89 | 117292 | 117456 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0285_2 | HRGMv2_0285_2_90 | 117532 | 120849 | + | CBM36 | GH8 |
| NULL(UNKNOWN) | HRGMv2_0285_2 | HRGMv2_0285_2_91 | 120992 | 121087 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0285_2 | HRGMv2_0285_2_92 | 121679 | 123115 | + | DUF5687 |
| TC | HRGMv2_0285_2 | HRGMv2_0285_2_93 | 123127 | 123837 | + | 3.A.1.124.5 |
| pfam | HRGMv2_0285_2 | HRGMv2_0285_2_94 | 123930 | 124700 | + | Ubie_methyltran | Methyltransf_4 | Methyltransf_25 | Methyltransf_31 |
| CAZyme | HRGMv2_0285_2 | HRGMv2_0285_2_95 | 124775 | 127126 | + | GH3 |
Gene ID: HRGMv2_0285_2_77
Type: CAZyme
Location: 94372 - 96774 (-)
Type: CAZyme
Location: 94372 - 96774 (-)
Gene ID: HRGMv2_0285_2_78
Type: pfam
Location: 96822 - 98243 (-)
Type: pfam
Location: 96822 - 98243 (-)
Gene ID: HRGMv2_0285_2_79
Type: pfam
Location: 98321 - 100063 (-)
Type: pfam
Location: 98321 - 100063 (-)
Gene ID: HRGMv2_0285_2_80
Type: TC
Location: 100085 - 103240 (-)
Type: TC
Location: 100085 - 103240 (-)
Gene ID: HRGMv2_0285_2_81
Type:
Location: 103281 - 103409 (-)
Type:
Location: 103281 - 103409 (-)
Gene ID: HRGMv2_0285_2_82
Type: CAZyme
Location: 103470 - 105425 (-)
Type: CAZyme
Location: 103470 - 105425 (-)
Gene ID: HRGMv2_0285_2_83
Type: TF
Location: 105518 - 109408 (-)
Type: TF
Location: 105518 - 109408 (-)
Gene ID: HRGMv2_0285_2_84
Type: pfam
Location: 109695 - 110903 (+)
Type: pfam
Location: 109695 - 110903 (+)
Gene ID: HRGMv2_0285_2_85
Type: TC
Location: 110913 - 112346 (+)
Type: TC
Location: 110913 - 112346 (+)
Gene ID: HRGMv2_0285_2_86
Type: CAZyme
Location: 112414 - 113538 (+)
Type: CAZyme
Location: 112414 - 113538 (+)
Gene ID: HRGMv2_0285_2_87
Type: CAZyme
Location: 113585 - 114541 (+)
Type: CAZyme
Location: 113585 - 114541 (+)
Gene ID: HRGMv2_0285_2_88
Type: pfam
Location: 114752 - 117190 (+)
Type: pfam
Location: 114752 - 117190 (+)
Gene ID: HRGMv2_0285_2_89
Type:
Location: 117292 - 117456 (+)
Type:
Location: 117292 - 117456 (+)
Gene ID: HRGMv2_0285_2_90
Type: CAZyme
Location: 117532 - 120849 (+)
Type: CAZyme
Location: 117532 - 120849 (+)
Gene ID: HRGMv2_0285_2_91
Type:
Location: 120992 - 121087 (+)
Type:
Location: 120992 - 121087 (+)
Gene ID: HRGMv2_0285_2_92
Type: pfam
Location: 121679 - 123115 (+)
Type: pfam
Location: 121679 - 123115 (+)
Gene ID: HRGMv2_0285_2_93
Type: TC
Location: 123127 - 123837 (+)
Type: TC
Location: 123127 - 123837 (+)
Gene ID: HRGMv2_0285_2_94
Type: pfam
Location: 123930 - 124700 (+)
Type: pfam
Location: 123930 - 124700 (+)
Gene ID: HRGMv2_0285_2_95
Type: CAZyme
Location: 124775 - 127126 (+)
Type: CAZyme
Location: 124775 - 127126 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000436035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.