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Cluster: HRGMv2_0285_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0285_13 HRGMv2_0285_13_42 42414 43652 - 3.A.1.122.1
TC HRGMv2_0285_13 HRGMv2_0285_13_43 43674 44444 - 3.A.1.122.2
TC HRGMv2_0285_13 HRGMv2_0285_13_44 44537 45715 - 3.A.1.122.1
pfam HRGMv2_0285_13 HRGMv2_0285_13_45 45782 47119 - OEP | OEP
pfam HRGMv2_0285_13 HRGMv2_0285_13_46 47547 49028 - tRNA-synt_2b | HGTP_anticodon | ProRS-C_1
TC HRGMv2_0285_13 HRGMv2_0285_13_47 49305 49991 + 9.B.186.1.3
CAZyme HRGMv2_0285_13 HRGMv2_0285_13_48 50042 50776 + GT51
Gene ID: HRGMv2_0285_13_42
Type: TC
Location: 42414 - 43652 (-)
Gene ID: HRGMv2_0285_13_43
Type: TC
Location: 43674 - 44444 (-)
Gene ID: HRGMv2_0285_13_44
Type: TC
Location: 44537 - 45715 (-)
Gene ID: HRGMv2_0285_13_45
Type: pfam
Location: 45782 - 47119 (-)
Gene ID: HRGMv2_0285_13_46
Type: pfam
Location: 47547 - 49028 (-)
Gene ID: HRGMv2_0285_13_47
Type: TC
Location: 49305 - 49991 (+)
Gene ID: HRGMv2_0285_13_48
Type: CAZyme
Location: 50042 - 50776 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0285_13_44 vegetarian > vegan 2.27941 0.00409
HRGMv2_0285_13_47 vegetarian > vegan 1.29807 0.00409

🧭 Explore Read Mapping of CGC

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