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Cluster: HRGMv2_0285_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0285_10 HRGMv2_0285_10_29 28342 31650 + 1.B.14.6.1
pfam HRGMv2_0285_10 HRGMv2_0285_10_30 31704 33698 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0285_10 HRGMv2_0285_10_31 33792 34910 + GH43_24
CAZyme HRGMv2_0285_10 HRGMv2_0285_10_32 35079 36326 + GH154
CAZyme HRGMv2_0285_10 HRGMv2_0285_10_33 36362 37618 + GH105
CAZyme HRGMv2_0285_10 HRGMv2_0285_10_34 37816 39897 + GH127
pfam HRGMv2_0285_10 HRGMv2_0285_10_35 40043 41593 - Endonuclease_1
TC HRGMv2_0285_10 HRGMv2_0285_10_36 41652 43271 - 2.A.35.2.1
Gene ID: HRGMv2_0285_10_29
Type: TC
Location: 28342 - 31650 (+)
Gene ID: HRGMv2_0285_10_30
Type: pfam
Location: 31704 - 33698 (+)
Gene ID: HRGMv2_0285_10_31
Type: CAZyme
Location: 33792 - 34910 (+)
Gene ID: HRGMv2_0285_10_32
Type: CAZyme
Location: 35079 - 36326 (+)
Gene ID: HRGMv2_0285_10_33
Type: CAZyme
Location: 36362 - 37618 (+)
Gene ID: HRGMv2_0285_10_34
Type: CAZyme
Location: 37816 - 39897 (+)
Gene ID: HRGMv2_0285_10_35
Type: pfam
Location: 40043 - 41593 (-)
Gene ID: HRGMv2_0285_10_36
Type: TC
Location: 41652 - 43271 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0285_10_31 vegetarian > omnivore 1.85694 0.01622
HRGMv2_0285_10_33 vegetarian > omnivore 1.39692 0.01622

🧭 Explore Read Mapping of CGC

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