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Cluster: HRGMv2_0285_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0285_9 HRGMv2_0285_9_10 9237 12347 + 1.B.14.6.1
pfam HRGMv2_0285_9 HRGMv2_0285_9_11 12360 14174 + SusD_RagB | SusD-like_3
TC HRGMv2_0285_9 HRGMv2_0285_9_12 14234 17389 + 1.B.14.6.1
pfam HRGMv2_0285_9 HRGMv2_0285_9_13 17413 19314 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0285_9 HRGMv2_0285_9_14 19337 21226 + GH43_4
CAZyme HRGMv2_0285_9 HRGMv2_0285_9_15 21284 22330 + GH43_5
CAZyme HRGMv2_0285_9 HRGMv2_0285_9_16 22490 24928 - GH51_2
Gene ID: HRGMv2_0285_9_10
Type: TC
Location: 9237 - 12347 (+)
Gene ID: HRGMv2_0285_9_11
Type: pfam
Location: 12360 - 14174 (+)
Gene ID: HRGMv2_0285_9_12
Type: TC
Location: 14234 - 17389 (+)
Gene ID: HRGMv2_0285_9_13
Type: pfam
Location: 17413 - 19314 (+)
Gene ID: HRGMv2_0285_9_14
Type: CAZyme
Location: 19337 - 21226 (+)
Gene ID: HRGMv2_0285_9_15
Type: CAZyme
Location: 21284 - 22330 (+)
Gene ID: HRGMv2_0285_9_16
Type: CAZyme
Location: 22490 - 24928 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0285_9_14 vegetarian > omnivore 1.73725 0.01622
HRGMv2_0285_9_14 vegetarian > vegan 1.16438 0.00409

🧭 Explore Read Mapping of CGC

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