Cluster: HRGMv2_0285_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0285
- CGC Family ID: CGCFAM_01415
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0285_8 | HRGMv2_0285_8_55 | 78373 | 79350 | + | GT90 |
| CAZyme | HRGMv2_0285_8 | HRGMv2_0285_8_56 | 79334 | 80377 | - | GT113 |
| pfam | HRGMv2_0285_8 | HRGMv2_0285_8_57 | 80412 | 81167 | - | Kdo |
| pfam | HRGMv2_0285_8 | HRGMv2_0285_8_58 | 81154 | 82089 | - | Lip_A_acyltrans |
| TC | HRGMv2_0285_8 | HRGMv2_0285_8_59 | 82116 | 83978 | - | 3.A.1.106.2 |
Gene ID: HRGMv2_0285_8_55
Type: CAZyme
Location: 78373 - 79350 (+)
Type: CAZyme
Location: 78373 - 79350 (+)
Gene ID: HRGMv2_0285_8_56
Type: CAZyme
Location: 79334 - 80377 (-)
Type: CAZyme
Location: 79334 - 80377 (-)
Gene ID: HRGMv2_0285_8_57
Type: pfam
Location: 80412 - 81167 (-)
Type: pfam
Location: 80412 - 81167 (-)
Gene ID: HRGMv2_0285_8_58
Type: pfam
Location: 81154 - 82089 (-)
Type: pfam
Location: 81154 - 82089 (-)
Gene ID: HRGMv2_0285_8_59
Type: TC
Location: 82116 - 83978 (-)
Type: TC
Location: 82116 - 83978 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000436035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.